Whole-genome regression and prediction methods applied to plant and animal breeding

G de Los Campos, JM Hickey, R Pong-Wong… - Genetics, 2013 - academic.oup.com
Genomic-enabled prediction is becoming increasingly important in animal and plant
breeding and is also receiving attention in human genetics. Deriving accurate predictions of …

Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking

HD Daetwyler, MPL Calus, R Pong-Wong… - Genetics, 2013 - academic.oup.com
The genomic prediction of phenotypes and breeding values in animals and plants has
developed rapidly into its own research field. Results of genomic prediction studies are often …

Single Step, a general approach for genomic selection

A Legarra, OF Christensen, I Aguilar, I Misztal - Livestock Science, 2014 - Elsevier
Genomic evaluation methods assume that the reference population is genotyped and
phenotyped. This is most often false and the generation of pseudo-phenotypes is uncertain …

Will genomic selection be a practical method for plant breeding?

A Nakaya, SN Isobe - Annals of botany, 2012 - academic.oup.com
Background Genomic selection or genome-wide selection (GS) has been highlighted as a
new approach for marker-assisted selection (MAS) in recent years. GS is a form of MAS that …

A class of Bayesian methods to combine large numbers of genotyped and non-genotyped animals for whole-genome analyses

RL Fernando, JCM Dekkers, DJ Garrick - Genetics Selection Evolution, 2014 - Springer
Background To obtain predictions that are not biased by selection, the conditional mean of
the breeding values must be computed given the data that were used for selection. When …

Potential of promotion of alleles by genome editing to improve quantitative traits in livestock breeding programs

J Jenko, G Gorjanc, MA Cleveland… - Genetics Selection …, 2015 - Springer
Background Genome editing (GE) is a method that enables specific nucleotides in the
genome of an individual to be changed. To date, use of GE in livestock has focussed on …

The impact of population structure on genomic prediction in stratified populations

Z Guo, DM Tucker, CJ Basten, H Gandhi… - Theoretical and applied …, 2014 - Springer
Key message Impacts of population structure on the evaluation of genomic heritability and
prediction were investigated and quantified using high-density markers in diverse panels in …

Improving genetic gain with genomic selection in autotetraploid potato

AT Slater, NOI Cogan, JW Forster, BJ Hayes… - The plant …, 2016 - Wiley Online Library
Potato (Solanum tuberosum L.) breeders consider a large number of traits during cultivar
development and progress in conventional breeding can be slow. There is accumulating …

Accuracy of pedigree and genomic predictions of carcass and novel meat quality traits in multi-breed sheep data assessed by cross-validation

HD Daetwyler, AA Swan, JHJ van der Werf… - Genetics Selection …, 2012 - Springer
Background Genomic predictions can be applied early in life without impacting selection
candidates. This is especially useful for meat quality traits in sheep. Carcass and novel meat …

Applied animal genomics: results from the field

AL Van Eenennaam, KA Weigel… - Annu. Rev. Anim …, 2014 - annualreviews.org
Genomic selection (GS) is the use of statistical methods to estimate the genetic merit of a
genotyped animal based on prediction equations derived from large ancestral populations …