Biosynthesis and function of 7-deazaguanine derivatives in bacteria and phages

V de Crécy-Lagard, G Hutinet… - Microbiology and …, 2024 - Am Soc Microbiol
Deazaguanine modifications play multifaceted roles in the molecular biology of DNA and
tRNA, shaping diverse yet essential biological processes, including the nuanced fine-tuning …

Hypermodified DNA in Viruses of E. coli and Salmonella

G Hutinet, YJ Lee, V de Crécy-Lagard, PR Weigele - EcoSal Plus, 2021 - Am Soc Microbiol
The DNA in bacterial viruses collectively contains a rich, yet relatively underexplored,
chemical diversity of nucleobases beyond the canonical adenine, guanine, cytosine, and …

Structural comparison of Ntn-hydrolases

C Oinonen, J Rouvinen - Protein Science, 2000 - cambridge.org
The Ntn-hydrolases (N-terminal nucleophile) are a superfamily of diverse enzymes that has
recently been characterized. All of the proteins in this family are activated autocatalytically; …

[图书][B] DNA and RNA modification enzymes: structure, mechanism, function and evolution

H Grosjean - 2009 - taylorfrancis.com
This volume is a timely and comprehensive description of the many facets of DNA and RNA
modification-editing processes and to some extent repair mechanisms. Each chapter offers …

Structural and functional analysis of a conjugated bile salt hydrolase from Bifidobacterium longum reveals an evolutionary relationship with penicillin V acylase

RS Kumar, JA Brannigan, AA Prabhune… - Journal of Biological …, 2006 - ASBMB
Bile salt hydrolase (BSH) is an enzyme produced by the intestinal microflora that catalyzes
the deconjugation of glycine-or taurine-linked bile salts. The crystal structure of BSH …

From cyclohydrolase to oxidoreductase: discovery of nitrile reductase activity in a common fold

SG Van Lanen, JS Reader… - Proceedings of the …, 2005 - National Acad Sciences
The enzyme YkvM from Bacillus subtilis was identified previously along with three other
enzymes (YkvJKL) in a bioinformatics search for enzymes involved in the biosynthesis of …

Complexed and ligand-free high-resolution structures of urate oxidase (Uox) from Aspergillus flavus: a reassignment of the active-site binding mode

P Retailleau, N Colloc'h, D Vivarès… - … Section D: Biological …, 2004 - journals.iucr.org
High-resolution X-ray structures of the complexes of Aspergillus flavus urate oxidase (Uox)
with three inhibitors, 8-azaxanthin (AZA), 9-methyl uric acid (MUA) and oxonic acid (OXC) …

Metal retention and replacement in QueD2 protect queuosine-tRNA biosynthesis in metal-starved Acinetobacter baumannii

MR Jordan, G Gonzalez-Gutierrez… - Proceedings of the …, 2022 - National Acad Sciences
In response to bacterial infection, the vertebrate host employs the metal-sequestering
protein calprotectin (CP) to withhold essential transition metals, notably Zn (II), to inhibit …

NMR structure of rALF‐Pm3, an anti‐lipopolysaccharide factor from shrimp: Model of the possible lipid A‐binding site

Y Yang, H Boze, P Chemardin, A Padilla… - Biopolymers …, 2009 - Wiley Online Library
The anti‐lipopolysaccharide factor ALF‐Pm3 is a 98‐residue protein identified in hemocytes
from the black tiger shrimp Penaeus monodon. It was expressed in Pichia pastoris from the …

[HTML][HTML] The flavinyl transferase ApbE of Pseudomonas stutzeri matures the NosR protein required for nitrous oxide reduction

L Zhang, C Trncik, SLA Andrade, O Einsle - Biochimica et Biophysica Acta …, 2017 - Elsevier
The copper-containing enzyme nitrous oxide reductase (N 2 OR) catalyzes the
transformation of nitrous oxide (N 2 O) to dinitrogen (N 2) in microbial denitrification. Several …