Regulation by small RNAs in bacteria: expanding frontiers

G Storz, J Vogel, KM Wassarman - Molecular cell, 2011 - cell.com
Research on the discovery and characterization of small, regulatory RNAs in bacteria has
exploded in recent years. These sRNAs act by base pairing with target mRNAs with which …

Hfq chaperone brings speed dating to bacterial sRNA

A Santiago‐Frangos… - Wiley Interdisciplinary …, 2018 - Wiley Online Library
Hfq is a ubiquitous, Sm‐like RNA binding protein found in most bacteria and some archaea.
Hfq binds small regulatory RNAs (sRNAs), facilitates base pairing between sRNAs and their …

RNA-binding proteins driving the regulatory activity of small non-coding RNAs in bacteria

AP Quendera, AF Seixas, RF Dos Santos… - Frontiers in molecular …, 2020 - frontiersin.org
Small non-coding RNAs (sRNAs) are critical post-transcriptional regulators of gene
expression. Distinct RNA-binding proteins (RBPs) influence the processing, stability and …

Small RNAs and Hfq capture unfolded RNA target sites during transcription

ML Rodgers, B O'Brien, SA Woodson - Molecular cell, 2023 - cell.com
Small ribonucleoproteins (sRNPs) target nascent precursor RNAs to guide folding,
modification, and splicing during transcription. Yet, rapid co-transcriptional folding of the …

The bacterial protein Hfq: much more than a mere RNA-binding factor

P Sobrero, C Valverde - Critical reviews in microbiology, 2012 - Taylor & Francis
Most of the sequenced bacterial genomes contain a gene encoding a protein known as Hfq
that resembles the eukaryotic RNA-binding proteins of the LSm family. It was originally …

Determination of in vivo target search kinetics of regulatory noncoding RNA

J Fei, D Singh, Q Zhang, S Park, D Balasubramanian… - Science, 2015 - science.org
Base-pairing interactions between nucleic acids mediate target recognition in many
biological processes. We developed a super-resolution imaging and modeling platform that …

Proteins that chaperone RNA regulation

SA Woodson, S Panja… - Microbiology …, 2018 - Am Soc Microbiol
ABSTRACT RNA-binding proteins chaperone the biological functions of noncoding RNA by
reducing RNA misfolding, improving matchmaking between regulatory RNA and targets, and …

Cycling of RNAs on hfq

EGH Wagner - RNA biology, 2013 - Taylor & Francis
The RNA chaperone Hfq is a key player in small RNA (sRNA)-mediated regulation of target
mRNAs in many bacteria. The absence of this protein causes pleiotropic phenotypes such …

The Sm‐like RNA chaperone Hfq mediates transcription antitermination at Rho‐dependent terminators

M Rabhi, O Espéli, A Schwartz, B Cayrol… - The EMBO …, 2011 - embopress.org
In Escherichia coli, the essential motor protein Rho promotes transcription termination in a
tightly controlled manner that is not fully understood. Here, we show that the general post …

Dynamic refolding of OxyS sRNA by the Hfq RNA chaperone

H Cai, J Roca, YF Zhao, SA Woodson - Journal of molecular biology, 2022 - Elsevier
Abstract The Sm protein Hfq chaperones small non-coding RNAs (sRNAs) in bacteria,
facilitating sRNA regulation of target mRNAs. Hfq acts in part by remodeling the sRNA and …