Peroxiredoxins and redox signaling in plants

M Liebthal, D Maynard, KJ Dietz - Antioxidants & redox signaling, 2018 - liebertpub.com
Abstract Significance: Peroxiredoxins (Prxs) are thiol peroxidases with multiple functions in
the antioxidant defense and redox signaling network of the cell. Our progressing …

Recent advances and challenges in plant phosphoproteomics

C Silva‐Sanchez, H Li, S Chen - Proteomics, 2015 - Wiley Online Library
Plants are sessile organisms that need to respond to environmental changes quickly and
efficiently. They can accomplish this by triggering specialized signaling pathways often …

The roles of post-translational modifications in the context of protein interaction networks

G Duan, D Walther - PLoS computational biology, 2015 - journals.plos.org
Among other effects, post-translational modifications (PTMs) have been shown to exert their
function via the modulation of protein-protein interactions. For twelve different main PTM …

The Plant PTM Viewer, a central resource for exploring plant protein modifications

P Willems, A Horne, T Van Parys… - The Plant …, 2019 - Wiley Online Library
Post‐translational modifications (PTM s) of proteins are central in any kind of cellular
signaling. Modern mass spectrometry technologies enable comprehensive identification and …

iPTMnet: an integrated resource for protein post-translational modification network discovery

H Huang, CN Arighi, KE Ross, J Ren, G Li… - Nucleic acids …, 2018 - academic.oup.com
Protein post-translational modifications (PTMs) play a pivotal role in numerous biological
processes by modulating regulation of protein function. We have developed iPTMnet (http …

Rice calcium‐dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose‐phosphate synthase and is required for a proper cold …

MC Almadanim, BM Alexandre… - Plant, cell & …, 2017 - Wiley Online Library
Calcium‐dependent protein kinases (CDPKs) are involved in plant tolerance mechanisms to
abiotic stresses. Although CDPKs are recognized as key messengers in signal transduction …

EPSD: a well-annotated data resource of protein phosphorylation sites in eukaryotes

S Lin, C Wang, J Zhou, Y Shi, C Ruan… - Briefings in …, 2021 - academic.oup.com
As an important post-translational modification (PTM), protein phosphorylation is involved in
the regulation of almost all of biological processes in eukaryotes. Due to the rapid progress …

[HTML][HTML] Confronting the data deluge: How artificial intelligence can be used in the study of plant stress

E Koh, RS Sunil, HYI Lam, M Mutwil - Computational and Structural …, 2024 - Elsevier
The advent of the genomics era enabled the generation of high-throughput data and
computational methods that serve as powerful hypothesis-generating tools to understand …

Protein phosphorylation database and prediction tools

MX Zhao, Q Chen, F Li, S Fu, B Huang… - Briefings in …, 2023 - academic.oup.com
Protein phosphorylation, one of the main protein post-translational modifications, is required
for regulating various life activities. Kinases and phosphatases that regulate protein …

Evolution of protein kinase substrate recognition at the active site

D Bradley, P Beltrao - PLoS biology, 2019 - journals.plos.org
Protein kinases catalyse the phosphorylation of target proteins, controlling most cellular
processes. The specificity of serine/threonine kinases is partly determined by interactions …