[HTML][HTML] Proteomes are of proteoforms: embracing the complexity

K Carbonara, M Andonovski, JR Coorssen - Proteomes, 2021 - mdpi.com
Proteomes are complex—much more so than genomes or transcriptomes. Thus, simplifying
their analysis does not simplify the issue. Proteomes are of proteoforms, not canonical …

ANPELA: analysis and performance assessment of the label-free quantification workflow for metaproteomic studies

J Tang, J Fu, Y Wang, B Li, Y Li, Q Yang… - Briefings in …, 2020 - academic.oup.com
Label-free quantification (LFQ) with a specific and sequentially integrated workflow of
acquisition technique, quantification tool and processing method has emerged as the …

Identification of the gene signature reflecting schizophrenia's etiology by constructing artificial intelligence‐based method of enhanced reproducibility

QX Yang, YX Wang, FC Li, S Zhang… - CNS Neuroscience …, 2019 - Wiley Online Library
Aims As one of the most fundamental questions in modern science,“what causes
schizophrenia (SZ)” remains a profound mystery due to the absence of objective gene …

A critical assessment of the feature selection methods used for biomarker discovery in current metaproteomics studies

J Tang, Y Wang, J Fu, Y Zhou, Y Luo… - Briefings in …, 2020 - academic.oup.com
Microbial community (MC) has great impact on mediating complex disease indications,
biogeochemical cycling and agricultural productivities, which makes metaproteomics …

Biomarker discovery for immunotherapy of pituitary adenomas: enhanced robustness and prediction ability by modern computational tools

Q Yang, Y Wang, S Zhang, J Tang, F Li, J Yin… - International Journal of …, 2019 - mdpi.com
Pituitary adenoma (PA) is prevalent in the general population. Due to its severe
complications and aggressive infiltration into the surrounding brain structure, the effective …

Assessing the effectiveness of direct data merging strategy in long-term and large-scale pharmacometabonomics

X Cui, Q Yang, B Li, J Tang, X Zhang, S Li… - Frontiers in …, 2019 - frontiersin.org
Because of the extended period of clinic data collection and huge size of analyzed samples,
the long-term and large-scale pharmacometabonomics profiling is frequently encountered in …

Identification of key long non-coding RNAs in the pathology of Alzheimer's disease and their functions based on genome-wide associations study, microarray, and …

Z Han, W Xue, L Tao, F Zhu - Journal of Alzheimer's Disease, 2019 - content.iospress.com
The pathogenesis of Alzheimer's disease (AD) is identified to be significantly regulated by
long non-coding RNA (lncRNA) based on in vivo and clinical experiments. Single nucleotide …

Identifying potential mitochondrial proteome signatures associated with the pathogenesis of pulmonary arterial hypertension in the rat model

J Wang, MN Uddin, Q Li, A Aierken… - Oxidative Medicine …, 2022 - Wiley Online Library
Pulmonary arterial hypertension (PAH) is a severe and progressive disease that affects the
heart and lungs and a global health concern that impacts individuals and society. Studies …

Computational perspective on the current state of the methods and new challenges in cancer drug discovery

DQ Wei, G Selvaraj, AC Kaushik - Current pharmaceutical …, 2018 - pubmed.ncbi.nlm.nih.gov
Computational Perspective on the Current State of the Methods and New Challenges in Cancer
Drug Discovery Computational Perspective on the Current State of the Methods and New …

[HTML][HTML] Ese-3 contributes to colon cancer progression by downregulating EHD2 and transactivating INPP4B

J Li, J Yang, L Hua, R Wang, H Li, C Zhang… - American Journal of …, 2021 - ncbi.nlm.nih.gov
Abstract Epithelium-specific Ets protein 3 (Ese-3), a member of the Ets family of transcription
factors, plays an important role in the development of cancers. However, little is known …