Best practices in metabarcoding of fungi: from experimental design to results
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
Current and emerging trends in techniques for plant pathogen detection
M Venbrux, S Crauwels, H Rediers - Frontiers in Plant Science, 2023 - frontiersin.org
Plant pathogenic microorganisms cause substantial yield losses in several economically
important crops, resulting in economic and social adversity. The spread of such plant …
important crops, resulting in economic and social adversity. The spread of such plant …
Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …
second largest group of organisms based on global richness estimates, with around 3 …
Primer, pipelines, parameters: issues in 16S rRNA gene sequencing
I Abellan-Schneyder, MS Matchado, S Reitmeier… - Msphere, 2021 - Am Soc Microbiol
Short-amplicon 16S rRNA gene sequencing is currently the method of choice for studies
investigating microbiomes. However, comparative studies on differences in procedures are …
investigating microbiomes. However, comparative studies on differences in procedures are …
Perspectives and benefits of high-throughput long-read sequencing in microbial ecology
Short-read, high-throughput sequencing (HTS) methods have yielded numerous important
insights into microbial ecology and function. Yet, in many instances short-read HTS …
insights into microbial ecology and function. Yet, in many instances short-read HTS …
The role of gut mycobiome in health and diseases
L Zhang, H Zhan, W Xu, S Yan… - Therapeutic advances in …, 2021 - journals.sagepub.com
The gut microbiome comprised of microbes from multiple kingdoms, including bacteria,
fungi, and viruses. Emerging evidence suggests that the intestinal fungi (the gut …
fungi, and viruses. Emerging evidence suggests that the intestinal fungi (the gut …
Identifying the 'unidentified'fungi: a global-scale long-read third-generation sequencing approach
Molecular identification methods, in particular high-throughput sequencing tools, have
greatly improved our knowledge about fungal diversity and biogeography, but many of the …
greatly improved our knowledge about fungal diversity and biogeography, but many of the …
[HTML][HTML] Comparing the significance of the utilization of next generation and third generation sequencing technologies in microbial metagenomics
Since the exploration of sequencing began in 2005, third and next-generation sequencing
(TGS and NGS) technologies have fundamentally changed metagenomics research. These …
(TGS and NGS) technologies have fundamentally changed metagenomics research. These …
[HTML][HTML] Applications of environmental DNA (eDNA) in agricultural systems: Current uses, limitations and future prospects
Global food production, food supply chains and food security are increasingly stressed by
human population growth and loss of arable land, becoming more vulnerable to …
human population growth and loss of arable land, becoming more vulnerable to …
[HTML][HTML] Diversity, detection and exploitation: Linking soil fungi and plant disease
Highlights•Plant-associated fungi in the rhizosphere are incredibly diverse.•High plant
diversity promotes fungal diversity and can suppress soil fungal pathogens.•Many …
diversity promotes fungal diversity and can suppress soil fungal pathogens.•Many …