Spliceator: multi-species splice site prediction using convolutional neural networks
Background Ab initio prediction of splice sites is an essential step in eukaryotic genome
annotation. Recent predictors have exploited Deep Learning algorithms and reliable gene …
annotation. Recent predictors have exploited Deep Learning algorithms and reliable gene …
Sequence and evolutionary features for the alternatively spliced exons of eukaryotic genes
SY Chen, C Li, X Jia, SJ Lai - International Journal of Molecular Sciences, 2019 - mdpi.com
Alternative splicing of pre-mRNAs is a crucial mechanism for maintaining protein diversity in
eukaryotes without requiring a considerable increase of genes in the number. Due to rapid …
eukaryotes without requiring a considerable increase of genes in the number. Due to rapid …
Comprehensive discovery of salt-responsive alternative splicing events based on Iso-Seq and RNA-seq in grapevine roots
Z Jin, X Lv, Y Sun, Z Fan, G Xiang, Y Yao - Environmental and experimental …, 2021 - Elsevier
Alternative splicing (AS) can enhance the adaptive capacity of organisms to respond to
abiotic stresses via transcriptome plasticity; however, the mechanism underlying the …
abiotic stresses via transcriptome plasticity; however, the mechanism underlying the …
The Nix locus on the male-specific homologue of chromosome 1 in Aedes albopictus is a strong candidate for a male-determining factor
Background Global concern over the rapid expansion of the Asian tiger mosquito, Aedes
albopictus, and its vector competence has highlighted an urgent need to improve currently …
albopictus, and its vector competence has highlighted an urgent need to improve currently …
Transcriptome-Wide Detection of Intron/Exon Definition in the Endogenous Pre-mRNA Transcripts of Mammalian Cells and Its Regulation by Depolarization
L Liu, U Das, S Ogunsola, J Xie - International Journal of Molecular …, 2022 - mdpi.com
Pairing of splice sites across an intron or exon is the central point of intron or exon definition
in pre-mRNA splicing with the latter mode proposed for most mammalian exons. However …
in pre-mRNA splicing with the latter mode proposed for most mammalian exons. However …
Widespread separation of the polypyrimidine tract from 3′ AG by G tracts in association with alternative exons in metazoa and plants
H Nguyen, J Xie - Frontiers in genetics, 2019 - frontiersin.org
At the end of introns, the polypyrimidine tract (Py) is often close to the 3′ AG in a consensus
(Y) 20NC AG gt in humans. Interestingly, we have found that they could also be separated …
(Y) 20NC AG gt in humans. Interestingly, we have found that they could also be separated …
ESI mutagenesis: A one-step method for introducing point mutations into bacterial artificial chromosome transgenes
A Rondelet, A Pozniakovsky, M Leuschner, I Poser… - bioRxiv, 2019 - biorxiv.org
Bacterial artificial chromosome (BAC)-based transgenes have emerged as a powerful tool
for controlled and conditional interrogation of protein function in higher eukaryotes. While …
for controlled and conditional interrogation of protein function in higher eukaryotes. While …
[图书][B] The Impact of Pre-mRNA Splice Site Selection on mRNA Stability and Splicing Fidelity in Methionine-Dependent Cancer Cells
FG Carranza - 2023 - search.proquest.com
Eukaryotic gene expression is an essential process for proper cell differentiation,
development, and the cell's response to environmental signals. Pre-mRNA splicing is an …
development, and the cell's response to environmental signals. Pre-mRNA splicing is an …
Genome-wide evolution of wobble base-pairing nucleotides of branchpoint motifs with increasing organismal complexity
How have the branchpoint motifs evolved in organisms of different complexity? Here we
identified and examined the consensus motifs (R1C2T3R4A5Y6, R: A or G, Y: C or T) of 898 …
identified and examined the consensus motifs (R1C2T3R4A5Y6, R: A or G, Y: C or T) of 898 …
ESI mutagenesis: a one-step method for introducing mutations into bacterial artificial chromosomes
A Rondelet, A Pozniakovsky… - Life science …, 2021 - life-science-alliance.org
Bacterial artificial chromosome (BAC)–based transgenes have emerged as a powerful tool
for controlled and conditional interrogation of protein function in higher eukaryotes. Although …
for controlled and conditional interrogation of protein function in higher eukaryotes. Although …