Information-theoretic foundations of DNA data storage
I Shomorony, R Heckel - Foundations and Trends® in …, 2022 - nowpublishers.com
Due to its longevity and enormous information density, DNA is an attractive medium for
archival data storage. Natural DNA more than 700.000 years old has been recovered, and …
archival data storage. Natural DNA more than 700.000 years old has been recovered, and …
Coding over sets for DNA storage
In this paper we study error-correcting codes for the storage of data in synthetic
deoxyribonucleic acid (DNA). We investigate a storage model where a data set is …
deoxyribonucleic acid (DNA). We investigate a storage model where a data set is …
Survey for a Decade of Coding for DNA Storage
Advancements in DNA synthesis and sequencing technologies have enabled the storage of
data on synthetic DNA strands. However, realizing its potential relies on the design of …
data on synthetic DNA strands. However, realizing its potential relies on the design of …
Coded trace reconstruction
Motivated by average-case trace reconstruction and coding for portable DNA-based storage
systems, we initiate the study of coded trace reconstruction, the design and analysis of high …
systems, we initiate the study of coded trace reconstruction, the design and analysis of high …
The DNA storage channel: Capacity and error probability bounds
N Weinberger, N Merhav - IEEE Transactions on Information …, 2022 - ieeexplore.ieee.org
The DNA storage channel is considered, in which the Deoxyribonucleic acid (DNA)
molecules comprising each codeword are stored without order, sampled times with …
molecules comprising each codeword are stored without order, sampled times with …
An upper bound on the capacity of the DNA storage channel
Paved by recent advances in sequencing and synthesis technologies, DNA has evolved to a
competitive medium for long-term data storage. In this paper we conduct an information …
competitive medium for long-term data storage. In this paper we conduct an information …
Trace reconstruction problems in computational biology
The problem of reconstructing a string from its error-prone copies, the trace reconstruction
problem, was introduced by Vladimir Levenshtein two decades ago. While there has been …
problem, was introduced by Vladimir Levenshtein two decades ago. While there has been …
Anchor-based correction of substitutions in indexed sets
Motivated by DNA-based data storage, we investigate a system where digital information is
stored in an unordered set of several vectors over a finite alphabet. Each vector begins with …
stored in an unordered set of several vectors over a finite alphabet. Each vector begins with …
Achieving the capacity of the DNA storage channel
Significant advances in biochemical technologies, such as synthesizing and sequencing
devices, have made DNA a competitive medium for archival data storage. In this paper we …
devices, have made DNA a competitive medium for archival data storage. In this paper we …
Cover your bases: How to minimize the sequencing coverage in DNA storage systems
Although the expenses associated with DNA sequencing have been rapidly decreasing, the
current cost of sequencing information stands at roughly $120/GB, which is dramatically …
current cost of sequencing information stands at roughly $120/GB, which is dramatically …