Information-theoretic foundations of DNA data storage

I Shomorony, R Heckel - Foundations and Trends® in …, 2022 - nowpublishers.com
Due to its longevity and enormous information density, DNA is an attractive medium for
archival data storage. Natural DNA more than 700.000 years old has been recovered, and …

Coding over sets for DNA storage

A Lenz, PH Siegel, A Wachter-Zeh… - IEEE Transactions on …, 2019 - ieeexplore.ieee.org
In this paper we study error-correcting codes for the storage of data in synthetic
deoxyribonucleic acid (DNA). We investigate a storage model where a data set is …

Survey for a Decade of Coding for DNA Storage

O Sabary, HM Kiah, PH Siegel… - IEEE Transactions on …, 2024 - ieeexplore.ieee.org
Advancements in DNA synthesis and sequencing technologies have enabled the storage of
data on synthetic DNA strands. However, realizing its potential relies on the design of …

Coded trace reconstruction

M Cheraghchi, R Gabrys, O Milenkovic… - IEEE Transactions on …, 2020 - ieeexplore.ieee.org
Motivated by average-case trace reconstruction and coding for portable DNA-based storage
systems, we initiate the study of coded trace reconstruction, the design and analysis of high …

The DNA storage channel: Capacity and error probability bounds

N Weinberger, N Merhav - IEEE Transactions on Information …, 2022 - ieeexplore.ieee.org
The DNA storage channel is considered, in which the Deoxyribonucleic acid (DNA)
molecules comprising each codeword are stored without order, sampled times with …

An upper bound on the capacity of the DNA storage channel

A Lenz, PH Siegel, A Wachter-Zeh… - 2019 IEEE Information …, 2019 - ieeexplore.ieee.org
Paved by recent advances in sequencing and synthesis technologies, DNA has evolved to a
competitive medium for long-term data storage. In this paper we conduct an information …

Trace reconstruction problems in computational biology

V Bhardwaj, PA Pevzner, C Rashtchian… - IEEE Transactions on …, 2020 - ieeexplore.ieee.org
The problem of reconstructing a string from its error-prone copies, the trace reconstruction
problem, was introduced by Vladimir Levenshtein two decades ago. While there has been …

Anchor-based correction of substitutions in indexed sets

A Lenz, PH Siegel, A Wachter-Zeh… - 2019 IEEE International …, 2019 - ieeexplore.ieee.org
Motivated by DNA-based data storage, we investigate a system where digital information is
stored in an unordered set of several vectors over a finite alphabet. Each vector begins with …

Achieving the capacity of the DNA storage channel

A Lenz, PH Siegel, A Wachter-Zeh… - ICASSP 2020-2020 …, 2020 - ieeexplore.ieee.org
Significant advances in biochemical technologies, such as synthesizing and sequencing
devices, have made DNA a competitive medium for archival data storage. In this paper we …

Cover your bases: How to minimize the sequencing coverage in DNA storage systems

D Bar-Lev, O Sabary, R Gabrys… - IEEE Transactions on …, 2024 - ieeexplore.ieee.org
Although the expenses associated with DNA sequencing have been rapidly decreasing, the
current cost of sequencing information stands at roughly $120/GB, which is dramatically …