Lessons from a decade of individual-based models for infectious disease transmission: a systematic review (2006-2015)

L Willem, F Verelst, J Bilcke, N Hens, P Beutels - BMC infectious diseases, 2017 - Springer
Abstract Background Individual-based models (IBMs) are useful to simulate events subject
to stochasticity and/or heterogeneity, and have become well established to model the …

Pneumococcal vaccines: host interactions, population dynamics, and design principles

NJ Croucher, A Løchen… - Annual review of …, 2018 - annualreviews.org
Streptococcus pneumoniae (the pneumococcus) is a nasopharyngeal commensal and
respiratory pathogen. Most isolates express a capsule, the species-wide diversity of which …

Within-host dynamics shape antibiotic resistance in commensal bacteria

NG Davies, S Flasche, M Jit, KE Atkins - Nature ecology & evolution, 2019 - nature.com
The spread of antibiotic resistance, a major threat to human health, is poorly understood.
Simple population-level models of bacterial transmission predict that above a certain rate of …

Estimated impact of revising the 13-valent pneumococcal conjugate vaccine schedule from 2+ 1 to 1+ 1 in England and Wales: A modelling study

YH Choi, N Andrews, E Miller - PLoS medicine, 2019 - journals.plos.org
Background In October 2017, the United Kingdom Joint Committee on Vaccination and
Immunisation (JCVI) recommended removal of one primary dose of the 13-valent …

Pathogen evolution and the immunological niche

S Cobey - Annals of the New York Academy of Sciences, 2014 - Wiley Online Library
Host immunity is a major driver of pathogen evolution and thus a major determinant of
pathogen diversity. Explanations for pathogen diversity traditionally assume simple …

Vaccination Drives Changes in Metabolic and Virulence Profiles of Streptococcus pneumoniae

ER Watkins, BS Penman, J Lourenço… - PLoS …, 2015 - journals.plos.org
The bacterial pathogen, Streptococcus pneumoniae (the pneumococcus), is a leading cause
of life-threatening illness and death worldwide. Available conjugate vaccines target only a …

The serotype distribution among healthy carriers before vaccination is essential for predicting the impact of pneumococcal conjugate vaccine on invasive disease

S Flasche, O Le Polain de Waroux… - PLoS computational …, 2015 - journals.plos.org
Pneumococcal conjugate vaccines (PCVs) have substantially reduced morbidity and
mortality of pneumococcal disease. The impact of the 7-valent PCV on all-serotype invasive …

Assessing the efficiency of catch-up campaigns for the introduction of pneumococcal conjugate vaccine: a modelling study based on data from PCV10 introduction in …

S Flasche, J Ojal, O Le Polain de Waroux, M Otiende… - BMC medicine, 2017 - Springer
Abstract Background The World Health Organisation recommends the use of catch-up
campaigns as part of the introduction of pneumococcal conjugate vaccines (PCVs) to …

Stress responses in Streptococcus species and their effects on the host

CT Nguyen, SS Park, DK Rhee - Journal of Microbiology, 2015 - Springer
Streptococci cause a variety of diseases, such as dental caries, pharyngitis, meningitis,
pneumonia, bacteremia, endocarditis, erysipelas, and necrotizing fasciitis. The natural niche …

[HTML][HTML] Seven challenges in modeling vaccine preventable diseases

CJE Metcalf, V Andreasen, ON Bjørnstad, K Eames… - Epidemics, 2015 - Elsevier
Vaccination has been one of the most successful public health measures since the
introduction of basic sanitation. Substantial mortality and morbidity reductions have been …