High resolution mass spectrometry based techniques at the crossroads of metabolic pathways
C Junot, F Fenaille, B Colsch… - Mass spectrometry …, 2014 - Wiley Online Library
The metabolome is the set of small molecular mass compounds found in biological media,
and metabolomics, which refers to as the analysis of metabolome in a given biological …
and metabolomics, which refers to as the analysis of metabolome in a given biological …
Using fragmentation trees and mass spectral trees for identifying unknown compounds in metabolomics
Identification of unknown metabolites is the bottleneck in advancing metabolomics, leaving
interpretation of metabolomics results ambiguous. The chemical diversity of metabolism is …
interpretation of metabolomics results ambiguous. The chemical diversity of metabolism is …
Computational mass spectrometry for small molecules
The identification of small molecules from mass spectrometry (MS) data remains a major
challenge in the interpretation of MS data. This review covers the computational aspects of …
challenge in the interpretation of MS data. This review covers the computational aspects of …
Substructure‐based annotation of high‐resolution multistage MSn spectral trees
L Ridder, JJJ van der Hooft… - Rapid …, 2012 - Wiley Online Library
RATIONALE High‐resolution multistage MSn data contains detailed information that can be
used for structural elucidation of compounds observed in metabolomics studies. However …
used for structural elucidation of compounds observed in metabolomics studies. However …
Computational mass spectrometry for small-molecule fragmentation
The identification of small molecules from mass spectrometry (MS) data remains a major
challenge in the interpretation of MS data. Computational aspects of identifying small …
challenge in the interpretation of MS data. Computational aspects of identifying small …
Automatic Chemical Structure Annotation of an LC–MSn Based Metabolic Profile from Green Tea
L Ridder, JJJ van der Hooft, S Verhoeven… - Analytical …, 2013 - ACS Publications
Liquid chromatography coupled with multistage accurate mass spectrometry (LC–MS n) can
generate comprehensive spectral information of metabolites in crude extracts. To support …
generate comprehensive spectral information of metabolites in crude extracts. To support …
General principles of identification by mass spectrometry
BL Milman - TrAC Trends in Analytical Chemistry, 2015 - Elsevier
The review is devoted to chemical identification using mass spectrometry as the most
powerful technique of qualitative analysis. The review begins with consideration of basic …
powerful technique of qualitative analysis. The review begins with consideration of basic …
Identifying the unknowns by aligning fragmentation trees
Mass spectrometry allows sensitive, automated, and high-throughput analysis of small
molecules. In principle, tandem mass spectrometry allows us to identify “unknown” small …
molecules. In principle, tandem mass spectrometry allows us to identify “unknown” small …
A map of mass spectrometry-based in silico fragmentation prediction and compound identification in metabolomics
CA Krettler, GG Thallinger - Briefings in Bioinformatics, 2021 - academic.oup.com
Metabolomics, the comprehensive study of the metabolome, and lipidomics—the large-scale
study of pathways and networks of cellular lipids—are major driving forces in enabling …
study of pathways and networks of cellular lipids—are major driving forces in enabling …