A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)
Genome-scale stoichiometric modeling of metabolism has become a standard systems
biology tool for modeling cellular physiology and growth. Extensions of this approach are …
biology tool for modeling cellular physiology and growth. Extensions of this approach are …
[HTML][HTML] Ediacara biota flourished in oligotrophic and bacterially dominated marine environments across Baltica
K Pehr, GD Love, A Kuznetsov, V Podkovyrov… - Nature …, 2018 - nature.com
Abstract Middle-to-late Ediacaran (575–541 Ma) marine sedimentary rocks record the first
appearance of macroscopic, multicellular body fossils, yet little is known about the …
appearance of macroscopic, multicellular body fossils, yet little is known about the …
[HTML][HTML] Quantitative Proteomics Reveals Common and Specific Responses of a Marine Diatom Thalassiosira pseudonana to Different Macronutrient Deficiencies
XH Chen, YY Li, H Zhang, JL Liu, ZX Xie, L Lin… - Frontiers in …, 2018 - frontiersin.org
Macronutrients such as nitrogen (N), phosphorus (P), and silicon (Si) are essential for the
productivity and distribution of diatoms in the ocean. Responses of diatoms to a particular …
productivity and distribution of diatoms in the ocean. Responses of diatoms to a particular …
[HTML][HTML] Elucidation of trophic interactions in an unusual single-cell nitrogen-fixing symbiosis using metabolic modeling
Marine nitrogen-fixing microorganisms are an important source of fixed nitrogen in oceanic
ecosystems. The colonial cyanobacterium Trichodesmium and diatom symbionts were …
ecosystems. The colonial cyanobacterium Trichodesmium and diatom symbionts were …
Adaptation to a limiting element involves mitigation of multiple elemental imbalances
PD Jeyasingh, RE Sherman… - Journal of the …, 2023 - royalsocietypublishing.org
About 20 elements underlie biology and thus constrain biomass production. Recent systems-
level observations indicate that altered supply of one element impacts the processing of …
level observations indicate that altered supply of one element impacts the processing of …
Phosphorus availability regulates intracellular nucleotides in marine eukaryotic phytoplankton
EB Kujawinski, K Longnecker… - Limnology and …, 2017 - Wiley Online Library
Marine eukaryotic phytoplankton adapt to low phosphorus (P) in the oceans through a
variety of step‐wise mechanisms including lipid substitution and decreased nucleic acid …
variety of step‐wise mechanisms including lipid substitution and decreased nucleic acid …
[HTML][HTML] Magnitude and influence of atmospheric phosphorus deposition on the southern Baltic Sea coast over 23 years: implications for coastal waters
M Berthold, R Wulff, V Reiff, U Karsten… - Environmental Sciences …, 2019 - Springer
Background There are various ways for nutrients to enter aquatic ecosystems causing
eutrophication. Phosphorus deposition through precipitation can be one pathway, besides …
eutrophication. Phosphorus deposition through precipitation can be one pathway, besides …
[HTML][HTML] Dynamic Allocation of Carbon Storage and Nutrient-Dependent Exudation in a Revised Genome-Scale Model of Prochlorococcus
Microbial life in the oceans impacts the entire marine ecosystem, global biogeochemistry
and climate. The marine cyanobacterium Prochlorococcus, an abundant component of this …
and climate. The marine cyanobacterium Prochlorococcus, an abundant component of this …
The maximum growth rate hypothesis is correct for eukaryotic photosynthetic organisms, but not cyanobacteria
The (maximum) growth rate (µmax) hypothesis predicts that cellular and tissue phosphorus
(P) concentrations should increase with increasing growth rate, and RNA should also …
(P) concentrations should increase with increasing growth rate, and RNA should also …
[HTML][HTML] Using maximum entropy production to describe microbial biogeochemistry over time and space in a meromictic pond
JJ Vallino, JA Huber - Frontiers in Environmental Science, 2018 - frontiersin.org
Determining how microbial communities organize and function at the ecosystem level is
essential to understanding and predicting how they will respond to environmental change …
essential to understanding and predicting how they will respond to environmental change …