Demystifying emerging bulk RNA-Seq applications: the application and utility of bioinformatic methodology
Significant innovations in next-generation sequencing techniques and bioinformatics tools
have impacted our appreciation and understanding of RNA. Practical RNA sequencing …
have impacted our appreciation and understanding of RNA. Practical RNA sequencing …
On the influence of several factors on pathway enrichment analysis
S Mubeen, A Tom Kodamullil… - Briefings in …, 2022 - academic.oup.com
Pathway enrichment analysis has become a widely used knowledge-based approach for the
interpretation of biomedical data. Its popularity has led to an explosion of both enrichment …
interpretation of biomedical data. Its popularity has led to an explosion of both enrichment …
Functional enrichment analysis of regulatory elements
A Garcia-Moreno, R López-Domínguez… - Biomedicines, 2022 - mdpi.com
Statistical methods for enrichment analysis are important tools to extract biological
information from omics experiments. Although these methods have been widely used for the …
information from omics experiments. Although these methods have been widely used for the …
miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems
F Kern, T Fehlmann, J Solomon, L Schwed… - Nucleic acids …, 2020 - academic.oup.com
Gene set enrichment analysis has become one of the most frequently used applications in
molecular biology research. Originally developed for gene sets, the same statistical …
molecular biology research. Originally developed for gene sets, the same statistical …
Popularity and performance of bioinformatics software: the case of gene set analysis
Abstract Background Gene Set Analysis (GSA) is arguably the method of choice for the
functional interpretation of omics results. The following paper explores the popularity and the …
functional interpretation of omics results. The following paper explores the popularity and the …
In silico Analysis Excavates A Novel Competing Endogenous RNA Subnetwork in Adolescent Idiopathic Scoliosis
HM Li, Y Liu, JY Ding, R Zhang, XY Liu… - Frontiers in medicine, 2020 - frontiersin.org
Background and Objective: Adolescent idiopathic scoliosis (AIS) is a complex three-
dimensional deformity of the spine. Mesenchymal stem cells (MSCs) regulate bone mass …
dimensional deformity of the spine. Mesenchymal stem cells (MSCs) regulate bone mass …
Construction of a novel mRNA–miRNA–lncRNA/circRNA triple subnetwork associated with immunity and aging in intervertebral disc degeneration
W Liu, HM Li, G Bai - Nucleosides, Nucleotides & Nucleic Acids, 2024 - Taylor & Francis
Objective Intervertebral disk degeneration (IVDD) is one of the most common causes of low
back pain. However, in the etiology of IVDD, the specific method by which nucleus pulposus …
back pain. However, in the etiology of IVDD, the specific method by which nucleus pulposus …
GSA Central—A web platform to perform, learn, and discuss gene set analysis
X Huang, X Lu, C Xie, S Jauhari, Z Xie, S Mei… - Frontiers in …, 2022 - frontiersin.org
Gene Set Analysis (GSA) is one of the most commonly used strategies to analyze omics
data. Hundreds of GSA-related papers have been published, giving birth to a GSA field in …
data. Hundreds of GSA-related papers have been published, giving birth to a GSA field in …
[PDF][PDF] Efficient gene set analysis of high-throughput data
PP Mishra - helda.helsinki.fi
A Statistical distribution models fitted on the empirical null distribution generated by GSA
and Allez with p53 data and their results............... 133 B Correlation of different p-value …
and Allez with p53 data and their results............... 133 B Correlation of different p-value …