Pan-genomics in the human genome era
RM Sherman, SL Salzberg - Nature Reviews Genetics, 2020 - nature.com
Since the early days of the genome era, the scientific community has relied on a single
'reference'genome for each species, which is used as the basis for a wide range of genetic …
'reference'genome for each species, which is used as the basis for a wide range of genetic …
Evolution of plant genome architecture
We have witnessed an explosion in our understanding of the evolution and structure of plant
genomes in recent years. Here, we highlight three important emergent realizations:(1) that …
genomes in recent years. Here, we highlight three important emergent realizations:(1) that …
A complete telomere-to-telomere assembly of the maize genome
J Chen, Z Wang, K Tan, W Huang, J Shi, T Li, J Hu… - Nature …, 2023 - nature.com
A complete telomere-to-telomere (T2T) finished genome has been the long pursuit of
genomic research. Through generating deep coverage ultralong Oxford Nanopore …
genomic research. Through generating deep coverage ultralong Oxford Nanopore …
Insights into the maize pan-genome and pan-transcriptome
Genomes at the species level are dynamic, with genes present in every individual (core) and
genes in a subset of individuals (dispensable) that collectively constitute the pan-genome …
genes in a subset of individuals (dispensable) that collectively constitute the pan-genome …
Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol
Switchgrass (Panicum virgatum L.) is a perennial grass that has been designated as an
herbaceous model biofuel crop for the United States of America. To facilitate accelerated …
herbaceous model biofuel crop for the United States of America. To facilitate accelerated …
Genotyping‐by‐sequencing approaches to characterize crop genomes: choosing the right tool for the right application
In the last decade, the revolution in sequencing technologies has deeply impacted crop
genotyping practice. New methods allowing rapid, high‐throughput genotyping of entire …
genotyping practice. New methods allowing rapid, high‐throughput genotyping of entire …
Enhancing genetic gain in the era of molecular breeding
As one of the important concepts in conventional quantitative genetics and breeding, genetic
gain can be defined as the amount of increase in performance that is achieved annually …
gain can be defined as the amount of increase in performance that is achieved annually …
Doubling down on genomes: polyploidy and crop plants
S Renny‐Byfield, JF Wendel - American journal of botany, 2014 - Wiley Online Library
Polyploidy, or whole genome multiplication, is ubiquitous among angiosperms. Many crop
species are relatively recent allopolyploids, resulting from interspecific hybridization and …
species are relatively recent allopolyploids, resulting from interspecific hybridization and …
Progress toward understanding heterosis in crop plants
PS Schnable, NM Springer - Annual review of plant biology, 2013 - annualreviews.org
Although heterosis, or hybrid vigor, is widely exploited in agriculture, a complete description
of its molecular underpinnings has remained elusive despite extensive investigation. It …
of its molecular underpinnings has remained elusive despite extensive investigation. It …
RNA sequencing of laser-capture microdissected compartments of the maize kernel identifies regulatory modules associated with endosperm cell differentiation
Endosperm is an absorptive structure that supports embryo development or seedling
germination in angiosperms. The endosperm of cereals is a main source of food, feed, and …
germination in angiosperms. The endosperm of cereals is a main source of food, feed, and …