Genome sequencing and population genomics in non-model organisms
H Ellegren - Trends in ecology & evolution, 2014 - cell.com
High-throughput sequencing technologies are revolutionizing the life sciences. The past 12
months have seen a burst of genome sequences from non-model organisms, in each case …
months have seen a burst of genome sequences from non-model organisms, in each case …
A field guide to whole‐genome sequencing, assembly and annotation
Genome sequencing projects were long confined to biomedical model organisms and
required the concerted effort of large consortia. Rapid progress in high‐throughput …
required the concerted effort of large consortia. Rapid progress in high‐throughput …
Whole-genome analyses resolve early branches in the tree of life of modern birds
To better determine the history of modern birds, we performed a genome-scale phylogenetic
analysis of 48 species representing all orders of Neoaves using phylogenomic methods …
analysis of 48 species representing all orders of Neoaves using phylogenomic methods …
Comparative genomics reveals insights into avian genome evolution and adaptation
Birds are the most species-rich class of tetrapod vertebrates and have wide relevance
across many research fields. We explored bird macroevolution using full genomes from 48 …
across many research fields. We explored bird macroevolution using full genomes from 48 …
Comparative analysis of transposable elements highlights mobilome diversity and evolution in vertebrates
Transposable elements (TEs) are major components of vertebrate genomes, with major
roles in genome architecture and evolution. In order to characterize both common patterns …
roles in genome architecture and evolution. In order to characterize both common patterns …
The Genome 10K Project: a way forward
KP Koepfli, B Paten… - Annu. Rev. Anim …, 2015 - annualreviews.org
The Genome 10K Project was established in 2009 by a consortium of biologists and
genome scientists determined to facilitate the sequencing and analysis of the complete …
genome scientists determined to facilitate the sequencing and analysis of the complete …
On the importance of being structured: instantaneous coalescence rates and human evolution—lessons for ancestral population size inference?
Most species are structured and influenced by processes that either increased or reduced
gene flow between populations. However, most population genetic inference methods …
gene flow between populations. However, most population genetic inference methods …
A fast, reproducible, high-throughput variant calling workflow for population genomics
CD Mirchandani, AJ Shultz… - Molecular Biology …, 2024 - academic.oup.com
The increasing availability of genomic resequencing data sets and high-quality reference
genomes across the tree of life present exciting opportunities for comparative population …
genomes across the tree of life present exciting opportunities for comparative population …
PSMC analysis of effective population sizes in molecular ecology and its application to black‐and‐white Ficedula flycatchers
Climatic fluctuations during the Quaternary period governed the demography of species and
contributed to population differentiation and ultimately speciation. Studies of these past …
contributed to population differentiation and ultimately speciation. Studies of these past …
Genomic flatlining in the endangered island fox
Genetic studies of rare and endangered species often focus on defining and preserving
genetically distinct populations, especially those having unique adaptations [1, 2]. Much less …
genetically distinct populations, especially those having unique adaptations [1, 2]. Much less …