Combinatorial landscapes

CM Reidys, PF Stadler - SIAM review, 2002 - SIAM
Fitness landscapes have proven to be a valuable concept in evolutionary biology,
combinatorial optimization, and the physics of disordered systems. A fitness landscape is a …

Pacing a small cage: mutation and RNA viruses

R Belshaw, A Gardner, A Rambaut… - Trends in ecology & …, 2008 - cell.com
RNA viruses have an extremely high mutation rate, and we argue that the most plausible
explanation for this is a trade-off with replication speed. We suggest that research into further …

Theory of lethal mutagenesis for viruses

JJ Bull, R Sanjuan, CO Wilke - Journal of virology, 2007 - Am Soc Microbiol
Mutation is the basis of adaptation. Yet, most mutations are detrimental, and elevating
mutation rates will impair a population's fitness in the short term. The latter realization has …

Life at the front of an expanding population

O Hallatschek, DR Nelson - Evolution, 2010 - academic.oup.com
Environmental changes have caused episodes of habitat expansions in the evolutionary
history of many species. These range changes affect the dynamics of biological evolution in …

Quasispecies theory in the context of population genetics

CO Wilke - BMC evolutionary biology, 2005 - Springer
Background A number of recent papers have cast doubt on the applicability of the
quasispecies concept to virus evolution, and have argued that population genetics is a more …

Biological evolution and statistical physics

B Drossel - Advances in physics, 2001 - Taylor & Francis
This review is an introduction to theoretical models and mathematical calculations for
biological evolution, aimed at physicists. The methods in the field are naturally very similar to …

Virus evolution: insights from an experimental approach

SF Elena, R Sanjuán - Annu. Rev. Ecol. Evol. Syst., 2007 - annualreviews.org
Viruses represent a serious problem faced by human and veterinary medicine and
agronomy. New viruses are constantly emerging while old ones evolve and challenge the …

Mutation–selection balance: ancestry, load, and maximum principle

J Hermisson, O Redner, H Wagner, E Baake - Theoretical population …, 2002 - Elsevier
We analyze the equilibrium behavior of deterministic haploid mutation–selection models. To
this end, both the forward and the time-reversed evolution processes are considered. The …

Mutation–selection models solved exactly with methods of statistical mechanics

E Baake, H Wagner - Genetics Research, 2001 - cambridge.org
We reconsider deterministic models of mutation and selection acting on populations of
sequences, or, equivalently, multilocus systems with complete linkage. Exact analytical …

Biological evolution through mutation, selection, and drift: An introductory review

E Baake, W Gabriel - Annual Reviews of Computational Physics, 2000 - books.google.com
5.1. 5. Error thresholds in finite populations 241 5.1. 6. Clues from the real world 244 5.2.
Muller's ratchet 245 5.2. 1. Ratchet dynamics 246 5.2. 2. Error thresholds versus Muller's …