Genetic engineering of algae for enhanced biofuel production

R Radakovits, RE Jinkerson, A Darzins… - Eukaryotic …, 2010 - Am Soc Microbiol
There are currently intensive global research efforts aimed at increasing and modifying the
accumulation of lipids, alcohols, hydrocarbons, polysaccharides, and other energy storage …

Microalgae as sustainable renewable energy feedstock for biofuel production

SR Medipally, FM Yusoff, S Banerjee… - BioMed research …, 2015 - Wiley Online Library
The world energy crisis and increased greenhouse gas emissions have driven the search
for alternative and environmentally friendly renewable energy sources. According to life …

[HTML][HTML] A large-scale evaluation of computational protein function prediction

P Radivojac, WT Clark, TR Oron, AM Schnoes… - Nature …, 2013 - nature.com
Automated annotation of protein function is challenging. As the number of sequenced
genomes rapidly grows, the overwhelming majority of protein products can only be …

Direct-coupling analysis of residue coevolution captures native contacts across many protein families

F Morcos, A Pagnani, B Lunt… - Proceedings of the …, 2011 - National Acad Sciences
The similarity in the three-dimensional structures of homologous proteins imposes strong
constraints on their sequence variability. It has long been suggested that the resulting …

[HTML][HTML] BIGSdb: scalable analysis of bacterial genome variation at the population level

KA Jolley, MCJ Maiden - BMC bioinformatics, 2010 - Springer
Background The opportunities for bacterial population genomics that are being realised by
the application of parallel nucleotide sequencing require novel bioinformatics platforms …

IMG: the integrated microbial genomes database and comparative analysis system

VM Markowitz, IMA Chen, K Palaniappan… - Nucleic acids …, 2012 - academic.oup.com
Abstract The Integrated Microbial Genomes (IMG) system serves as a community resource
for comparative analysis of publicly available genomes in a comprehensive integrated …

[HTML][HTML] Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison

AF Auch, M von Jan, HP Klenk, M Göker - Standards in genomic sciences, 2010 - Springer
The pragmatic species concept for Bacteria and Archaea is ultimately based on DNA-DNA
hybridization (DDH). While enabling the taxonomist, in principle, to obtain an estimate of the …

Identification of direct residue contacts in protein–protein interaction by message passing

M Weigt, RA White, H Szurmant… - Proceedings of the …, 2009 - National Acad Sciences
Understanding the molecular determinants of specificity in protein–protein interaction is an
outstanding challenge of postgenome biology. The availability of large protein databases …

The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome

DA Sela, J Chapman, A Adeuya… - Proceedings of the …, 2008 - National Acad Sciences
Following birth, the breast-fed infant gastrointestinal tract is rapidly colonized by a microbial
consortium often dominated by bifidobacteria. Accordingly, the complete genome sequence …

The Genomes OnLine Database (GOLD) v. 5: a metadata management system based on a four level (meta) genome project classification

TBK Reddy, AD Thomas, D Stamatis… - Nucleic acids …, 2015 - academic.oup.com
Abstract The Genomes OnLine Database (GOLD; http://www. genomesonline. org) is a
comprehensive online resource to catalog and monitor genetic studies worldwide. GOLD …