The landscape of lysogeny across microbial community density, diversity and energetics

CB Silveira, A Luque, F Rohwer - Environmental microbiology, 2021 - Wiley Online Library
Lysogens are common at high bacterial densities, an observation that contrasts with the
prevailing view of lysogeny as a low‐density refugium strategy. Here, we review the …

Lytic to temperate switching of viral communities

B Knowles, CB Silveira, BA Bailey, K Barott, VA Cantu… - Nature, 2016 - nature.com
Microbial viruses can control host abundances via density-dependent lytic predator–prey
dynamics. Less clear is how temperate viruses, which coexist and replicate with their host …

Identification of free-living and particle-associated microbial communities present in hadal regions of the Mariana Trench

J Tarn, LM Peoples, K Hardy, J Cameron… - Frontiers in …, 2016 - frontiersin.org
Relatively few studies have described the microbial populations present in ultra-deep hadal
environments, largely as a result of difficulties associated with sampling. Here we report …

Microbial community composition and diversity in Caspian Sea sediments

N Mahmoudi, MS Robeson, HF Castro… - FEMS Microbiology …, 2014 - pmc.ncbi.nlm.nih.gov
The Caspian Sea is heavily polluted due to industrial and agricultural effluents as well as
extraction of oil and gas reserves. Microbial communities can influence the fate of …

Different carboxyl‐rich alicyclic molecules proxy compounds select distinct bacterioplankton for oxidation of dissolved organic matter in the mesopelagic Sargasso …

S Liu, R Parsons, K Opalk, N Baetge… - Limnology and …, 2020 - Wiley Online Library
Marine dissolved organic matter (DOM) varies in its recalcitrance to rapid microbial
degradation. DOM of varying recalcitrance can be exported from the ocean surface to depth …

Metabolomic fingerprints of individual algal cells using the single-probe mass spectrometry technique

M Sun, Z Yang, B Wawrik - Frontiers in plant science, 2018 - frontiersin.org
Traditional approaches for the assessment of physiological responses of microbes in the
environment rely on bulk filtration techniques that obscure differences among populations as …

Ammonia-oxidizing archaea have better adaptability in oxygenated/hypoxic alternant conditions compared to ammonia-oxidizing bacteria

S Liu, B Hu, Z He, B Zhang, G Tian, P Zheng… - Applied microbiology and …, 2015 - Springer
Ammonia oxidation is performed by both ammonia-oxidizing archaea (AOA) and ammonia-
oxidizing bacteria (AOB). Few studies compared the adaptability of AOA and AOB for …

Parental material and cultivation determine soil bacterial community structure and fertility

L Sun, J Gao, T Huang, JRA Kendall… - FEMS Microbiology …, 2015 - academic.oup.com
Microbes are the key components of the soil environment, playing important roles during soil
development. Soil parent material provides the foundation elements that comprise the basic …

Multifaceted impacts of the stony coral Porites astreoides on picoplankton abundance and community composition

SP McNally, RJ Parsons, AE Santoro… - Limnology and …, 2017 - Wiley Online Library
Picoplankton foster essential recycling of nutrients in the oligotrophic waters sustaining coral
reef ecosystems. Despite this fact, there is a paucity of data on how the specific interactions …

Different bacterial communities involved in peptide decomposition between normoxic and hypoxic coastal waters

S Liu, B Wawrik, Z Liu - Frontiers in microbiology, 2017 - frontiersin.org
Proteins and peptides are key components of the labile dissolved organic matter pool in
marine environments. Knowing which types of bacteria metabolize peptides can inform the …