Next-generation sequencing—an overview of the history, tools, and “Omic” applications
JK Kulski - Next generation sequencing-advances, applications …, 2016 - books.google.com
Next-generation sequencing (NGS) technologies using DNA, RNA, or methylation
sequencing have impacted enormously on the life sciences. NGS is the choice for large …
sequencing have impacted enormously on the life sciences. NGS is the choice for large …
Analysis of plant microbe interactions in the era of next generation sequencing technologies
C Knief - Frontiers in plant science, 2014 - frontiersin.org
Next generation sequencing (NGS) technologies have impressively accelerated research in
biological science during the last years by enabling the production of large volumes of …
biological science during the last years by enabling the production of large volumes of …
DBG2OLC: efficient assembly of large genomes using long erroneous reads of the third generation sequencing technologies
The highly anticipated transition from next generation sequencing (NGS) to third generation
sequencing (3GS) has been difficult primarily due to high error rates and excessive …
sequencing (3GS) has been difficult primarily due to high error rates and excessive …
A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants
Background Most published genome sequences are drafts, and most are dominated by
computational gene prediction. Draft genomes typically incorporate considerable sequence …
computational gene prediction. Draft genomes typically incorporate considerable sequence …
Faustovirus, an asfarvirus-related new lineage of giant viruses infecting amoebae
DG Reteno, S Benamar, JB Khalil, J Andreani… - Journal of …, 2015 - Am Soc Microbiol
Giant viruses are protist-associated viruses belonging to the proposed order Megavirales;
almost all have been isolated from Acanthamoeba spp. Their isolation in humans suggests …
almost all have been isolated from Acanthamoeba spp. Their isolation in humans suggests …
[HTML][HTML] Genomic analysis of snub-nosed monkeys (Rhinopithecus) identifies genes and processes related to high-altitude adaptation
The snub-nosed monkey genus Rhinopithecus includes five closely related species
distributed across altitudinal gradients from 800 to 4,500 m. Rhinopithecus bieti …
distributed across altitudinal gradients from 800 to 4,500 m. Rhinopithecus bieti …
Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative …
Background Fungal plant pathogens belonging to the genus Venturia cause damaging scab
diseases of members of the Rosaceae. In terms of economic impact, the most important of …
diseases of members of the Rosaceae. In terms of economic impact, the most important of …
Structural variation during dog domestication: insights from gray wolf and dhole genomes
GD Wang, XJ Shao, B Bai, J Wang… - National Science …, 2019 - academic.oup.com
Several processes like phenotypic evolution, disease susceptibility and environmental
adaptations, which fashion the domestication of animals, are largely attributable to structural …
adaptations, which fashion the domestication of animals, are largely attributable to structural …
Draft genome of Dugesia japonica provides insights into conserved regulatory elements of the brain restriction gene nou-darake in planarians
Y An, A Kawaguchi, C Zhao, A Toyoda, A Sharifi-Zarchi… - Zoological letters, 2018 - Springer
Background Planarians are non-parasitic Platyhelminthes (flatworms) famous for their
regeneration ability and for having a well-organized brain. Dugesia japonica is a typical …
regeneration ability and for having a well-organized brain. Dugesia japonica is a typical …
Diminishing return for increased Mappability with longer sequencing reads: implications of the k-mer distributions in the human genome
Background The amount of non-unique sequence (non-singletons) in a genome directly
affects the difficulty of read alignment to a reference assembly for high throughput …
affects the difficulty of read alignment to a reference assembly for high throughput …