The design and analysis of transposon insertion sequencing experiments
Transposon insertion sequencing (TIS) is a powerful approach that can be extensively
applied to the genome-wide definition of loci that are required for bacterial growth under …
applied to the genome-wide definition of loci that are required for bacterial growth under …
DNA methyltransferases and epigenetic regulation in bacteria
S Adhikari, PD Curtis - FEMS microbiology reviews, 2016 - academic.oup.com
Epigenetics is a change in gene expression that is heritable without a change in DNA
sequence itself. This phenomenon is well studied in eukaryotes, particularly in humans for …
sequence itself. This phenomenon is well studied in eukaryotes, particularly in humans for …
Comprehensive Essentiality Analysis of the Mycobacterium tuberculosis Genome via Saturating Transposon Mutagenesis
MA DeJesus, ER Gerrick, W Xu, SW Park, JE Long… - MBio, 2017 - Am Soc Microbiol
For decades, identifying the regions of a bacterial chromosome that are necessary for
viability has relied on mapping integration sites in libraries of random transposon mutants to …
viability has relied on mapping integration sites in libraries of random transposon mutants to …
DEG 15, an update of the Database of Essential Genes that includes built-in analysis tools
Essential genes refer to genes that are required by an organism to survive under specific
conditions. Studies of the minimal-gene-set for bacteria have elucidated fundamental …
conditions. Studies of the minimal-gene-set for bacteria have elucidated fundamental …
Essential genome of Pseudomonas aeruginosa in cystic fibrosis sputum
Defining the essential genome of bacterial pathogens is central to developing an
understanding of the biological processes controlling disease. This has proven elusive for …
understanding of the biological processes controlling disease. This has proven elusive for …
Functional genomics of the rapidly replicating bacterium Vibrio natriegens by CRISPRi
The fast-growing Gram-negative bacterium Vibrio natriegens is an attractive microbial
system for molecular biology and biotechnology due to its remarkably short generation time …
system for molecular biology and biotechnology due to its remarkably short generation time …
[HTML][HTML] Tn-Seq analysis of Vibrio cholerae intestinal colonization reveals a role for T6SS-mediated antibacterial activity in the host
Analysis of genes required for host infection will provide clues to the drivers of evolutionary
fitness of pathogens like Vibrio cholerae, a mounting threat to global heath. We used …
fitness of pathogens like Vibrio cholerae, a mounting threat to global heath. We used …
The essential gene set of a photosynthetic organism
Synechococcus elongatus PCC 7942 is a model organism used for studying photosynthesis
and the circadian clock, and it is being developed for the production of fuel, industrial …
and the circadian clock, and it is being developed for the production of fuel, industrial …
Proteomic analysis of Vibrio cholerae outer membrane vesicles
Outer membrane vesicles (OMVs) produced by Gram-negative bacteria provide an
interesting research material for defining cell-envelope proteins without experimental cell …
interesting research material for defining cell-envelope proteins without experimental cell …
[HTML][HTML] ARTIST: high-resolution genome-wide assessment of fitness using transposon-insertion sequencing
JR Pritchard, MC Chao, S Abel, BM Davis… - PLoS …, 2014 - journals.plos.org
Transposon-insertion sequencing (TIS) is a powerful approach for deciphering genetic
requirements for bacterial growth in different conditions, as it enables simultaneous genome …
requirements for bacterial growth in different conditions, as it enables simultaneous genome …