The orchard plot: cultivating a forest plot for use in ecology, evolution, and beyond

S Nakagawa, M Lagisz, RE O'Dea… - Research Synthesis …, 2021 - Wiley Online Library
“Classic” forest plots show the effect sizes from individual studies and the aggregate effect
from a meta‐analysis. However, in ecology and evolution, meta‐analyses routinely contain …

Beyond differences in means: robust graphical methods to compare two groups in neuroscience

GA Rousselet, CR Pernet… - European Journal of …, 2017 - Wiley Online Library
If many changes are necessary to improve the quality of neuroscience research, one
relatively simple step could have great pay‐offs: to promote the adoption of detailed …

Ionizable lipid nanoparticles with integrated immune checkpoint inhibition for mRNA CAR T cell engineering

AG Hamilton, KL Swingle, RA Joseph… - Advanced …, 2023 - Wiley Online Library
The programmed cell death protein 1 (PD‐1) signaling pathway is a major source of
dampened T cell activity in the tumor microenvironment. While clinical approaches to …

Prime-seq, efficient and powerful bulk RNA sequencing

A Janjic, LE Wange, JW Bagnoli, J Geuder, P Nguyen… - Genome biology, 2022 - Springer
Cost-efficient library generation by early barcoding has been central in propelling single-cell
RNA sequencing. Here, we optimize and validate prime-seq, an early barcoding bulk RNA …

Caution regarding the specificities of pan-cancer microbial structure

A Gihawi, CS Cooper, DS Brewer - Microbial genomics, 2023 - microbiologyresearch.org
Results published in an article by Poore et al.(Nature. 2020; 579: 567–574) suggested that
machine learning models can almost perfectly distinguish between tumour types based on …

The foraging potential of the Holocene Cape south coast of South Africa without the Palaeo-Agulhas Plain

CD Wren, S Botha, J De Vynck, MA Janssen… - Quaternary Science …, 2020 - Elsevier
Abstract The Palaeo-Agulhas Plain formed an important habitat exploited by Pleistocene
hunter-gatherer populations during periods of lower sea level. This productive, grassy …

EpiSmokEr: a robust classifier to determine smoking status from DNA methylation data

S Bollepalli, T Korhonen, J Kaprio, S Anders… - …, 2019 - Taylor & Francis
Aim: Smoking strongly influences DNA methylation, with current and never smokers
exhibiting different methylation profiles. Methods: To advance the practical applicability of …

[HTML][HTML] Rainfall partitioning by vegetation in China: A quantitative synthesis

Y Zhang, C Yuan, N Chen, DF Levia - Journal of Hydrology, 2023 - Elsevier
Rainfall partitioning into stemflow, throughfall, and interception loss by vegetation alters
hydrological and biogeochemical fluxes between vegetation and soil. Here, we compiled a …

Predictive regression modeling with MEG/EEG: from source power to signals and cognitive states

D Sabbagh, P Ablin, G Varoquaux, A Gramfort… - NeuroImage, 2020 - Elsevier
Predicting biomedical outcomes from Magnetoencephalography and
Electroencephalography (M/EEG) is central to applications like decoding, brain-computer …

Combining magnetoencephalography with magnetic resonance imaging enhances learning of surrogate-biomarkers

DA Engemann, O Kozynets, D Sabbagh, G Lemaître… - Elife, 2020 - elifesciences.org
Electrophysiological methods, that is M/EEG, provide unique views into brain health. Yet,
when building predictive models from brain data, it is often unclear how electrophysiology …