A-to-I RNA editing—immune protector and transcriptome diversifier

E Eisenberg, EY Levanon - Nature Reviews Genetics, 2018 - nature.com
Modifications of RNA affect its function and stability. RNA editing is unique among these
modifications because it not only alters the cellular fate of RNA molecules but also alters …

Naturally occurring modified ribonucleosides

PJ McCown, A Ruszkowska, CN Kunkler… - Wiley …, 2020 - Wiley Online Library
The chemical identity of RNA molecules beyond the four standard ribonucleosides has
fascinated scientists since pseudouridine was characterized as the “fifth” ribonucleotide in …

RADAR: a rigorously annotated database of A-to-I RNA editing

G Ramaswami, JB Li - Nucleic acids research, 2014 - academic.oup.com
We present RADAR—a rigorously annotated database of A-to-I RNA editing (available at
http://RNAedit. com). The identification of A-to-I RNA editing sites has been dramatically …

The genomic landscape and clinical relevance of A-to-I RNA editing in human cancers

L Han, L Diao, S Yu, X Xu, J Li, R Zhang, Y Yang… - Cancer cell, 2015 - cell.com
Summary Adenosine-to-inosine (A-to-I) RNA editing is a widespread post-transcriptional
mechanism, but its genomic landscape and clinical relevance in cancer have not been …

[HTML][HTML] Reliable identification of genomic variants from RNA-seq data

R Piskol, G Ramaswami, JB Li - The American Journal of Human Genetics, 2013 - cell.com
Identifying genomic variation is a crucial step for unraveling the relationship between
genotype and phenotype and can yield important insights into human diseases. Prevailing …

Identifying RNA editing sites using RNA sequencing data alone

G Ramaswami, R Zhang, R Piskol, LP Keegan… - Nature …, 2013 - nature.com
We show that RNA editing sites can be called with high confidence using RNA sequencing
data from multiple samples across either individuals or species, without the need for …

Rewriting the transcriptome: adenosine-to-inosine RNA editing by ADARs

CR Walkley, JB Li - Genome biology, 2017 - Springer
One of the most prevalent forms of post-transcritpional RNA modification is the conversion of
adenosine nucleosides to inosine (A-to-I), mediated by the ADAR family of enzymes. The …

Selective time-dependent changes in activity and cell-specific gene expression in human postmortem brain

F Dachet, JB Brown, T Valyi-Nagy, KD Narayan… - Scientific reports, 2021 - nature.com
As a means to understand human neuropsychiatric disorders from human brain samples, we
compared the transcription patterns and histological features of postmortem brain to fresh …

Extensive recoding of the neural proteome in cephalopods by RNA editing

JJC Rosenthal, E Eisenberg - Annual Review of Animal …, 2023 - annualreviews.org
The coleoid cephalopods have the largest brains, and display the most complex behaviors,
of all invertebrates. The molecular and cellular mechanisms that underlie these remarkable …

Mitochondrial 16S rRNA is methylated by tRNA methyltransferase TRMT61B in all vertebrates

D Bar-Yaacov, I Frumkin, Y Yashiro, T Chujo… - PLoS …, 2016 - journals.plos.org
The mitochondrial ribosome, which translates all mitochondrial DNA (mtDNA)-encoded
proteins, should be tightly regulated pre-and post-transcriptionally. Recently, we found RNA …