Basic concepts of microarrays and potential applications in clinical microbiology

MB Miller, YW Tang - Clinical microbiology reviews, 2009 - Am Soc Microbiol
The introduction of in vitro nucleic acid amplification techniques, led by real-time PCR, into
the clinical microbiology laboratory has transformed the laboratory detection of viruses and …

Bead-based microfluidic immunoassays: the next generation

CT Lim, Y Zhang - Biosensors and Bioelectronics, 2007 - Elsevier
Microfluidic devices possess many advantages like high throughput, short analysis time,
small volume and high sensitivity that fulfill all the important criteria of an immunoassay used …

lumi: a pipeline for processing Illumina microarray

P Du, WA Kibbe, SM Lin - Bioinformatics, 2008 - academic.oup.com
Illumina microarray is becoming a popular microarray platform. The BeadArray technology
from Illumina makes its preprocessing and quality control different from other microarray …

Relative impact of nucleotide and copy number variation on gene expression phenotypes

BE Stranger, MS Forrest, M Dunning, CE Ingle… - Science, 2007 - science.org
Extensive studies are currently being performed to associate disease susceptibility with one
form of genetic variation, namely, single-nucleotide polymorphisms (SNPs). In recent years …

Patterns of Cis Regulatory Variation in Diverse Human Populations

BE Stranger, SB Montgomery, AS Dimas, L Parts… - PLoS …, 2012 - journals.plos.org
The genetic basis of gene expression variation has long been studied with the aim to
understand the landscape of regulatory variants, but also more recently to assist in the …

[HTML][HTML] Population genomics of human gene expression

BE Stranger, AC Nica, MS Forrest, A Dimas, CP Bird… - Nature …, 2007 - nature.com
Genetic variation influences gene expression, and this variation in gene expression can be
efficiently mapped to specific genomic regions and variants. Here we have used gene …

Recurrent variations in DNA methylation in human pluripotent stem cells and their differentiated derivatives

KL Nazor, G Altun, C Lynch, H Tran, JV Harness… - Cell stem cell, 2012 - cell.com
Human pluripotent stem cells (hPSCs) are potential sources of cells for modeling disease
and development, drug discovery, and regenerative medicine. However, it is important to …

Imagable 4T1 model for the study of late stage breast cancer

K Tao, M Fang, J Alroy, GG Sahagian - BMC cancer, 2008 - Springer
Background The 4T1 mouse mammary tumor cell line is one of only a few breast cancer
models with the capacity to metastasize efficiently to sites affected in human breast cancer …

Model-based variance-stabilizing transformation for Illumina microarray data

SM Lin, P Du, W Huber, WA Kibbe - Nucleic acids research, 2008 - academic.oup.com
Variance stabilization is a step in the preprocessing of microarray data that can greatly
benefit the performance of subsequent statistical modeling and inference. Due to the often …

beadarray: R classes and methods for Illumina bead-based data

MJ Dunning, ML Smith, ME Ritchie, S Tavaré - Bioinformatics, 2007 - academic.oup.com
The R/Bioconductor package beadarray allows raw data from Illumina experiments to be
read and stored in convenient R classes. Users are free to choose between various methods …