Watching proteins wiggle: mapping structures with two-dimensional infrared spectroscopy

A Ghosh, JS Ostrander, MT Zanni - Chemical reviews, 2017 - ACS Publications
Proteins exhibit structural fluctuations over decades of time scales. From the picosecond
side chain motions to aggregates that form over the course of minutes, characterizing protein …

Transparent window vibrational probes for the characterization of proteins with high structural and temporal resolution

R Adhikary, J Zimmermann, FE Romesberg - Chemical reviews, 2017 - ACS Publications
Vibrational spectroscopy provides a direct route to the physicochemical characterization of
molecules. While both IR and Raman spectroscopy have been used for decades to provide …

Two-dimensional IR spectroscopy of protein dynamics using two vibrational labels: A site-specific genetically encoded unnatural amino acid and an active site ligand

MC Thielges, JY Axup, D Wong, HS Lee… - The Journal of …, 2011 - ACS Publications
Protein dynamics and interactions in myoglobin (Mb) were characterized via two vibrational
dynamics labels (VDLs): a genetically incorporated site-specific azide (Az) bearing …

Dynamics of the folded and unfolded villin headpiece (HP35) measured with ultrafast 2D IR vibrational echo spectroscopy

JK Chung, MC Thielges… - Proceedings of the …, 2011 - National Acad Sciences
A series of two-dimensional infrared vibrational echo experiments performed on nitrile-
labeled villin headpiece [HP35-(CN) 2] is described. HP35 is a small peptide composed of …

Semisynthetic and biomolecular hydrogen evolution catalysts

B Kandemir, S Chakraborty, Y Guo, KL Bren - Inorganic chemistry, 2016 - ACS Publications
There has been great interest in the development of stable, inexpensive, efficient catalysts
capable of reducing aqueous protons to hydrogen (H2), an alternative to fossil fuels. While …

Transparent window 2D IR spectroscopy of proteins

MC Thielges - The Journal of chemical physics, 2021 - pubs.aip.org
Proteins are complex, heterogeneous macromolecules that exist as ensembles of
interconverting states on a complex energy landscape. A complete, molecular-level …

Protein dynamics in cytochrome P450 molecular recognition and substrate specificity using 2D IR vibrational echo spectroscopy

MC Thielges, JK Chung, MD Fayer - Journal of the American …, 2011 - ACS Publications
Cytochrome (cyt) P450s hydroxylate a variety of substrates that can differ widely in their
chemical structure. The importance of these enzymes in drug metabolism and other …

Instantaneous Mapping of Coherently Coupled Electronic Transitions and Energy Transfers<? format?> in a Photosynthetic Complex Using Angle-Resolved Coherent …

IP Mercer, YC El-Taha, N Kajumba, JP Marangos… - Physical review …, 2009 - APS
Understanding the role of coherent electronic motion is expected to resolve general
questions of importance in macromolecular energy transfer. We demonstrate a novel …

Low-frequency protein motions coupled to catalytic sites

CM Cheatum - Annual review of physical chemistry, 2020 - annualreviews.org
This review examines low-frequency vibrational modes of proteins and their coupling to
enzyme catalytic sites. That protein motions are critical to enzyme function is clear, but the …

Dynamics of a myoglobin mutant enzyme: 2D IR vibrational echo experiments and simulations

S Bagchi, BT Nebgen, RF Loring… - Journal of the American …, 2010 - ACS Publications
Myoglobin (Mb) double mutant T67R/S92D displays peroxidase enzymatic activity in
contrast to the wild type protein. The CO adduct of T67R/S92D shows two CO absorption …