Proliferating active matter
The fascinating patterns of collective motion created by autonomously driven particles have
fuelled active-matter research for over two decades. So far, theoretical active-matter …
fuelled active-matter research for over two decades. So far, theoretical active-matter …
A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)
Genome-scale stoichiometric modeling of metabolism has become a standard systems
biology tool for modeling cellular physiology and growth. Extensions of this approach are …
biology tool for modeling cellular physiology and growth. Extensions of this approach are …
Morphological instability and roughening of growing 3D bacterial colonies
A Martínez-Calvo, T Bhattacharjee… - Proceedings of the …, 2022 - National Acad Sciences
How do growing bacterial colonies get their shapes? While colony morphogenesis is well
studied in two dimensions, many bacteria grow as large colonies in three-dimensional (3D) …
studied in two dimensions, many bacteria grow as large colonies in three-dimensional (3D) …
A growing bacterial colony in two dimensions as an active nematic
How a single bacterium becomes a colony of many thousand cells is important in
biomedicine and food safety. Much is known about the molecular and genetic bases of this …
biomedicine and food safety. Much is known about the molecular and genetic bases of this …
Bacterial growth: a statistical physicist's guide
Bacterial growth presents many beautiful phenomena that pose new theoretical challenges
to statistical physicists, and are also amenable to laboratory experimentation. This review …
to statistical physicists, and are also amenable to laboratory experimentation. This review …
Verticalization of bacterial biofilms
Biofilms are communities of bacteria adhered to surfaces. Recently, biofilms of rod-shaped
bacteria were observed at single-cell resolution and shown to develop from a disordered …
bacteria were observed at single-cell resolution and shown to develop from a disordered …
Self-driven jamming in growing microbial populations
In natural settings, microbes tend to grow in dense populations,,, where they need to push
against their surroundings to accommodate space for new cells. The associated contact …
against their surroundings to accommodate space for new cells. The associated contact …
Learning the space-time phase diagram of bacterial swarm expansion
H Jeckel, E Jelli, R Hartmann… - Proceedings of the …, 2019 - National Acad Sciences
Coordinated dynamics of individual components in active matter are an essential aspect of
life on all scales. Establishing a comprehensive, causal connection between intracellular …
life on all scales. Establishing a comprehensive, causal connection between intracellular …
New understanding of multidrug efflux and permeation in antibiotic resistance, persistence, and heteroresistance
Antibiotics effective against Gram‐negative ESKAPE pathogens are a critical area of unmet
need. Infections caused by these pathogens are not only difficult to treat but finding new …
need. Infections caused by these pathogens are not only difficult to treat but finding new …
Spatiotemporal establishment of dense bacterial colonies growing on hard agar
The physical interactions of growing bacterial cells with each other and with their
surroundings significantly affect the structure and dynamics of biofilms. Here a 3D agent …
surroundings significantly affect the structure and dynamics of biofilms. Here a 3D agent …