Deep discovery informs difficult deployment in plant microbiome science

D Russ, CR Fitzpatrick, PJPL Teixeira, JL Dangl - Cell, 2023 - cell.com
Plant-associated microbiota can extend plant immune system function, improve nutrient
acquisition and availability, and alleviate abiotic stresses. Thus, naturally beneficial …

[HTML][HTML] Insights into plant–microbe interactions in the rhizosphere to promote sustainable agriculture in the new crops era

X Shi, Y Zhao, M Xu, L Ma, JM Adams, Y Shi - New Crops, 2024 - Elsevier
Microbes accompany plants throughout their entire lifecycles, from seeds to ripe fruits. Plant–
microbe interactions have long been a focus of research in many subdisciplines, leading to …

Metabolic interaction models recapitulate leaf microbiota ecology

M Schäfer, AR Pacheco, R Künzler, M Bortfeld-Miller… - Science, 2023 - science.org
Resource allocation affects the structure of microbiomes, including those associated with
living hosts. Understanding the degree to which this dependency determines interspecies …

Leaf microbiome dysbiosis triggered by T2SS-dependent enzyme secretion from opportunistic Xanthomonas pathogens

S Pfeilmeier, A Werz, M Ote, M Bortfeld-Miller… - Nature …, 2024 - nature.com
In healthy plants, the innate immune system contributes to maintenance of microbiota
homoeostasis, while disease can be associated with microbiome perturbation or dysbiosis …

Assessing microbiome population dynamics using wild-type isogenic standardized hybrid (WISH)-tags

BBJ Daniel, Y Steiger, A Sintsova, CM Field… - Nature …, 2024 - nature.com
Microbiomes feature recurrent compositional structures under given environmental
conditions. However, these patterns may conceal diverse underlying population dynamics …

Phosphoribosylpyrophosphate synthetase as a metabolic valve advances Methylobacterium/Methylorubrum phyllosphere colonization and plant growth

C Zhang, DF Zhou, MY Wang, YZ Song… - Nature …, 2024 - nature.com
The proficiency of phyllosphere microbiomes in efficiently utilizing plant-provided nutrients is
pivotal for their successful colonization of plants. The methylotrophic capabilities of …

The role of plasticity and stochasticity in coexistence

A Kalirad, RJ Sommer - Ecology Letters, 2024 - Wiley Online Library
Species coexistence in ecological communities is a central feature of biodiversity. Different
concepts, ie, contemporary niche theory, modern coexistence theory, and the unified neutral …

[HTML][HTML] Resolving metabolic interaction mechanisms in plant microbiomes

AR Pacheco, JA Vorholt - Current Opinion in Microbiology, 2023 - Elsevier
Metabolic interactions are fundamental to the assembly and functioning of microbiomes,
including those of plants. However, disentangling the molecular basis of these interactions …

Nitrogen-fixing bacteria promote growth and bioactive components accumulation of Astragalus mongholicus by regulating plant metabolism and rhizosphere …

S Zhiyong, G Yaxuan, W Yuanyuan, Y Xiang, G Xu… - BMC microbiology, 2024 - Springer
Background The excessive application of chemical fertilizers in the cultivation of Astragalus
mongholicus Bunge results in a reduction in the quality of the medicinal plant and …

Bacterial endophytes of sugar maple leaves vary more idiosyncratically than epiphytes across a large geographic area

G Demarquest, G Lajoie - FEMS Microbiology Ecology, 2023 - academic.oup.com
Bacteria from the leaf surface and the leaf tissue have been attributed with several beneficial
properties for their plant host. Though physically connected, the microbial ecology of these …