Posterior summarization in Bayesian phylogenetics using Tracer 1.7
Cancer is one of the leading causes of death worldwide. There is a definite need for novel
approaches to improve the diagnostics and treatment of cancers. The pathological …
approaches to improve the diagnostics and treatment of cancers. The pathological …
A survey of Monte Carlo methods for parameter estimation
Statistical signal processing applications usually require the estimation of some parameters
of interest given a set of observed data. These estimates are typically obtained either by …
of interest given a set of observed data. These estimates are typically obtained either by …
MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space
F Ronquist, M Teslenko, P Van Der Mark… - Systematic …, 2012 - academic.oup.com
Since its introduction in 2001, MrBayes has grown in popularity as a software package for
Bayesian phylogenetic inference using Markov chain Monte Carlo (MCMC) methods. With …
Bayesian phylogenetic inference using Markov chain Monte Carlo (MCMC) methods. With …
Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes
Phylogenetic inference and evaluating support for inferred relationships is at the core of
many studies testing evolutionary hypotheses. Despite the popularity of nonparametric …
many studies testing evolutionary hypotheses. Despite the popularity of nonparametric …
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
The increase in the number of large data sets and the complexity of current probabilistic
sequence evolution models necessitates fast and reliable phylogeny reconstruction …
sequence evolution models necessitates fast and reliable phylogeny reconstruction …
[PDF][PDF] MRBAYES: Bayesian inference of phylogenetic trees
JP Huelsenbeck, F Ronquist - Bioinformatics, 2001 - xyala2.bio.ed.ac.uk
The program MRBAYES performs Bayesian inference of phylogeny using a variant of
Markov chain Monte Carlo. Availability: MRBAYES, including the source code …
Markov chain Monte Carlo. Availability: MRBAYES, including the source code …
[PDF][PDF] Topic Models
DM Blei - Text mining/Chapman and Hall/CRC, 2009 - kobus.ca
Scientists need new tools to explore and browse large collections of scholarly literature.
Thanks to organizations such as JSTOR, which scan and index the original bound archives …
Thanks to organizations such as JSTOR, which scan and index the original bound archives …
A likelihood approach to estimating phylogeny from discrete morphological character data
PO Lewis - Systematic biology, 2001 - academic.oup.com
Evolutionary biologists have adopted simple likelihood models for purposes of estimating
ancestral states and evaluating character independence on specified phylogenies; however …
ancestral states and evaluating character independence on specified phylogenies; however …
Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests
D Posada, TR Buckley - Systematic biology, 2004 - academic.oup.com
Abstract Model selection is a topic of special relevance in molecular phylogenetics that
affects many, if not all, stages of phylogenetic inference. Here we discuss some fundamental …
affects many, if not all, stages of phylogenetic inference. Here we discuss some fundamental …
Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative
M Anisimova, O Gascuel - Systematic biology, 2006 - academic.oup.com
We revisit statistical tests for branches of evolutionary trees reconstructed upon molecular
data. A new, fast, approximate likelihood-ratio test (aLRT) for branches is presented here as …
data. A new, fast, approximate likelihood-ratio test (aLRT) for branches is presented here as …