Posterior summarization in Bayesian phylogenetics using Tracer 1.7

A Rambaut, AJ Drummond, D Xie, G Baele… - Systematic …, 2018 - academic.oup.com
Cancer is one of the leading causes of death worldwide. There is a definite need for novel
approaches to improve the diagnostics and treatment of cancers. The pathological …

A survey of Monte Carlo methods for parameter estimation

D Luengo, L Martino, M Bugallo, V Elvira… - EURASIP Journal on …, 2020 - Springer
Statistical signal processing applications usually require the estimation of some parameters
of interest given a set of observed data. These estimates are typically obtained either by …

MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space

F Ronquist, M Teslenko, P Van Der Mark… - Systematic …, 2012 - academic.oup.com
Since its introduction in 2001, MrBayes has grown in popularity as a software package for
Bayesian phylogenetic inference using Markov chain Monte Carlo (MCMC) methods. With …

Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes

M Anisimova, M Gil, JF Dufayard, C Dessimoz… - Systematic …, 2011 - academic.oup.com
Phylogenetic inference and evaluating support for inferred relationships is at the core of
many studies testing evolutionary hypotheses. Despite the popularity of nonparametric …

A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood

S Guindon, O Gascuel - Systematic biology, 2003 - academic.oup.com
The increase in the number of large data sets and the complexity of current probabilistic
sequence evolution models necessitates fast and reliable phylogeny reconstruction …

[PDF][PDF] MRBAYES: Bayesian inference of phylogenetic trees

JP Huelsenbeck, F Ronquist - Bioinformatics, 2001 - xyala2.bio.ed.ac.uk
The program MRBAYES performs Bayesian inference of phylogeny using a variant of
Markov chain Monte Carlo. Availability: MRBAYES, including the source code …

[PDF][PDF] Topic Models

DM Blei - Text mining/Chapman and Hall/CRC, 2009 - kobus.ca
Scientists need new tools to explore and browse large collections of scholarly literature.
Thanks to organizations such as JSTOR, which scan and index the original bound archives …

A likelihood approach to estimating phylogeny from discrete morphological character data

PO Lewis - Systematic biology, 2001 - academic.oup.com
Evolutionary biologists have adopted simple likelihood models for purposes of estimating
ancestral states and evaluating character independence on specified phylogenies; however …

Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests

D Posada, TR Buckley - Systematic biology, 2004 - academic.oup.com
Abstract Model selection is a topic of special relevance in molecular phylogenetics that
affects many, if not all, stages of phylogenetic inference. Here we discuss some fundamental …

Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative

M Anisimova, O Gascuel - Systematic biology, 2006 - academic.oup.com
We revisit statistical tests for branches of evolutionary trees reconstructed upon molecular
data. A new, fast, approximate likelihood-ratio test (aLRT) for branches is presented here as …