Recent progress in non-native nucleic acid modifications

LK McKenzie, R El-Khoury, JD Thorpe… - Chemical Society …, 2021 - pubs.rsc.org
While Nature harnesses RNA and DNA to store, read and write genetic information, the
inherent programmability, synthetic accessibility and wide functionality of these nucleic acids …

i-Motif DNA: structural features and significance to cell biology

H Abou Assi, M Garavís, C González… - Nucleic acids …, 2018 - academic.oup.com
The i-motif represents a paradigmatic example of the wide structural versatility of nucleic
acids. In remarkable contrast to duplex DNA, i-motifs are four-stranded DNA structures held …

DNA quadruple helices in nanotechnology

JL Mergny, D Sen - Chemical Reviews, 2019 - ACS Publications
DNA has played an early and powerful role in the development of bottom-up
nanotechnologies, not least because of DNA's precise, predictable, and controllable …

Properties and biological impact of RNA G-quadruplexes: from order to turmoil and back

P Kharel, G Becker, V Tsvetkov… - Nucleic acids research, 2020 - academic.oup.com
Abstract Guanine-quadruplexes (G4s) are non-canonical four-stranded structures that can
be formed in guanine (G) rich nucleic acid sequences. A great number of G-rich sequences …

Chemical regulation of DNA i‐motifs for nanobiotechnology and therapeutics

M Debnath, K Fatma, J Dash - Angewandte Chemie, 2019 - Wiley Online Library
DNA sequences rich in cytosine have the propensity, under acidic pH, to fold into four‐
stranded intercalated DNA structures called i‐motifs. Recent studies have provided …

Emerging roles of i-motif in gene expression and disease treatment

X Luo, J Zhang, Y Gao, W Pan, Y Yang, X Li… - Frontiers in …, 2023 - frontiersin.org
As non-canonical nucleic acid secondary structures consisting of cytosine-rich nucleic acids,
i-motifs can form under certain conditions. Several i-motif sequences have been identified in …

Ratiometric i-motif-based sensor for precise long-term monitoring of pH micro alterations in the nucleoplasm and interchromatin granules

NA Petrunina, AS Shtork, MM Lukina, VB Tsvetkov… - ACS …, 2023 - ACS Publications
DNA-intercalated motifs (iMs) are facile scaffolds for the design of various pH-responsive
nanomachines, including biocompatible pH sensors. First, DNA pH sensors relied on …

Supernatural: Artificial Nucleobases and Backbones to Program Hybridization-Based Assemblies and Circuits

M Lopez-Tena, SK Chen, N Winssinger - Bioconjugate Chemistry, 2022 - ACS Publications
The specificity and predictability of hybridization make oligonucleotides a powerful platform
to program assemblies and networks with logic-gated responses, an area of research which …

Structural Motifs at the Telomeres and Their Role in Regulatory Pathways

AFR Alanazi, GN Parkinson, S Haider - Biochemistry, 2024 - ACS Publications
Telomeres are specialized structures, found at the ends of linear chromosomes in eukaryotic
cells, that play a crucial role in maintaining the stability and integrity of genomes. They are …

End-ligation can dramatically stabilize i-motifs at neutral pH

R El-Khoury, MJ Damha - Chemical Communications, 2023 - pubs.rsc.org
Stabilizing i-motif structures at neutral pH and physiological temperature remains a major
challenge. Here, we demonstrate the use of chemical end-ligation to stabilize intramolecular …