Challenges in developing cell culture media using machine learning

T Hashizume, BW Ying - Biotechnology Advances, 2024 - Elsevier
Microbial and mammalian cells are widely used in the food, pharmaceutical, and medical
industries. Developing or optimizing culture media is essential to improve cell culture …

[HTML][HTML] AI applications in functional genomics

C Caudai, A Galizia, F Geraci, L Le Pera… - Computational and …, 2021 - Elsevier
We review the current applications of artificial intelligence (AI) in functional genomics. The
recent explosion of AI follows the remarkable achievements made possible by “deep …

Chaos as an interpretable benchmark for forecasting and data-driven modelling

W Gilpin - arXiv preprint arXiv:2110.05266, 2021 - arxiv.org
The striking fractal geometry of strange attractors underscores the generative nature of
chaos: like probability distributions, chaotic systems can be repeatedly measured to produce …

[HTML][HTML] Combined mechanistic modeling and machine-learning approaches in systems biology–A systematic literature review

A Procopio, G Cesarelli, L Donisi, A Merola… - Computer methods and …, 2023 - Elsevier
Background and objective Mechanistic-based Model simulations (MM) are an effective
approach commonly employed, for research and learning purposes, to better investigate …

Environmental Galenics: large-scale fortification of extant microbiomes with engineered bioremediation agents

V de Lorenzo - … Transactions of the Royal Society B, 2022 - royalsocietypublishing.org
Contemporary synthetic biology-based biotechnologies are generating tools and strategies
for reprogramming genomes for specific purposes, including improvement and/or creation of …

[HTML][HTML] Integrative approaches to abiotic stress management in crops: combining bioinformatics educational tools and artificial intelligence applications

X Zhang, Z Ibrahim, MB Khaskheli, H Raza, F Zhou… - Sustainability, 2024 - mdpi.com
Abiotic stresses, including drought, salinity, extreme temperatures and nutrient deficiencies,
pose significant challenges to crop production and global food security. To combat these …

Analyzing dispersive optical solitons in nonlinear models using an analytical technique and its applications

J Ahmad, Z Mustafa, J Habib - Optical and Quantum Electronics, 2024 - Springer
The article focuses on exploring three distinct equations: the Jimbo-Miwa equation (JME),
the generalized shallow water equation (GSWE), and the Hirota-Satsuma-Ito equation …

[HTML][HTML] Advances in flux balance analysis by integrating machine learning and mechanism-based models

A Sahu, MA Blätke, JJ Szymański, N Töpfer - Computational and structural …, 2021 - Elsevier
The availability of multi-omics data sets and genome-scale metabolic models for various
organisms provide a platform for modeling and analyzing genotype-to-phenotype …

Unsupervised quantification of naturalistic animal behaviors for gaining insight into the brain

MH McCullough, GJ Goodhill - Current Opinion in Neurobiology, 2021 - Elsevier
Neural computation has evolved to optimize the behaviors that enable our survival. Although
much previous work in neuroscience has focused on constrained task behaviors, recent …

Deep reconstruction of strange attractors from time series

W Gilpin - Advances in neural information processing …, 2020 - proceedings.neurips.cc
Experimental measurements of physical systems often have a limited number of
independent channels, causing essential dynamical variables to remain unobserved …