Ribosomal stalk protein silencing partially corrects the ΔF508-CFTR functional expression defect

G Veit, K Oliver, PM Apaja, D Perdomo… - PLoS …, 2016 - journals.plos.org
The most common cystic fibrosis (CF) causing mutation, deletion of phenylalanine 508
(ΔF508 or Phe508del), results in functional expression defect of the CF transmembrane …

Deciphering the co-adaptation of codon usage between respiratory coronaviruses and their human host uncovers candidate therapeutics for COVID-19

K Nambou, M Anakpa - Infection, Genetics and Evolution, 2020 - Elsevier
Abstract Coronavirus disease 2019 (COVID-19) has caused thousands of deaths worldwide
and has become an urgent public health concern. The extraordinary interhuman …

Predicting synonymous codon usage and optimizing the heterologous gene for expression in E. coli

J Tian, Y Yan, Q Yue, X Liu, X Chu, N Wu, Y Fan - Scientific Reports, 2017 - nature.com
Of the 20 common amino acids, 18 are encoded by multiple synonymous codons. These
synonymous codons are not redundant; in fact, all of codons contribute substantially to …

Evolutionary analysis of polyproline motifs in Escherichia coli reveals their regulatory role in translation

F Qi, M Motz, K Jung, J Lassak… - PLoS computational …, 2018 - journals.plos.org
Translation of consecutive prolines causes ribosome stalling, which is alleviated but cannot
be fully compensated by the elongation factor P. However, the presence of polyproline …

Correcting the F508del-CFTR variant by modulating eukaryotic translation initiation factor 3–mediated translation initiation

DM Hutt, S Loguercio, DM Roth, AI Su… - Journal of Biological …, 2018 - ASBMB
Inherited and somatic rare diseases result from> 200,000 genetic variants leading to loss-or
gain-of-toxic function, often caused by protein misfolding. Many of these misfolded variants …

Improved production of fatty acids by Saccharomyces cerevisiae through screening a cDNA library from the oleaginous yeast Yarrowia lipolytica

S Shi, H Ji, V Siewers, J Nielsen - FEMS yeast research, 2016 - academic.oup.com
Biological production of fatty acid (FA)-derived products has gained increasing attention to
replace petroleum-based fuels and chemicals. FA biosynthesis is highly regulated, and …

Optimizing assembly and production of native bispecific antibodies by codon de-optimization

G Magistrelli, Y Poitevin, F Schlosser, G Pontini… - MAbs, 2017 - Taylor & Francis
When production of bispecific antibodies requires the co-expression and assembly of three
or four polypeptide chains, low expression of one chain can significantly limit assembly and …

On the spatial organization of mRNA, plasmids, and ribosomes in a bacterial host overexpressing membrane proteins

LA van Gijtenbeek, A Robinson, AM van Oijen… - PLoS …, 2016 - journals.plos.org
By using fluorescence imaging, we provide a time-resolved single-cell view on coupled
defects in transcription, translation, and growth during expression of heterologous …

Codon bias can determine sorting of a potassium channel protein

AJ Engel, M Kithil, M Langhans, O Rauh, M Cartolano… - Cells, 2021 - mdpi.com
Due to the redundancy of the genetic code most amino acids are encoded by multiple
synonymous codons. It has been proposed that a biased frequency of synonymous codons …

Hidden silent codes in viral genomes

E Goz, H Zur, T Tuller - … Biology: Self/Nonself Evolution, Species and …, 2017 - Springer
Viruses are small infectious agents that replicate only inside the living cells of other
organisms and comprise approximately 94% of the nucleic acid-containing particles in the …