The phage‐host arms race: shaping the evolution of microbes
Bacteria, the most abundant organisms on the planet, are outnumbered by a factor of 10 to 1
by phages that infect them. Faced with the rapid evolution and turnover of phage particles …
by phages that infect them. Faced with the rapid evolution and turnover of phage particles …
Explaining microbial population genomics through phage predation
F Rodriguez-Valera, AB Martin-Cuadrado… - Nature …, 2009 - nature.com
The remarkable diversity of genes within the pool of prokaryotic genomes belonging to the
same species or pan-genome is difficult to reconcile with the widely accepted paradigm …
same species or pan-genome is difficult to reconcile with the widely accepted paradigm …
Spatial scaling of microbial biodiversity
J Green, BJM Bohannan - Trends in ecology & evolution, 2006 - cell.com
A central goal in ecology is to understand the spatial scaling of biodiversity. Patterns in the
spatial distribution of organisms provide important clues about the underlying mechanisms …
spatial distribution of organisms provide important clues about the underlying mechanisms …
A bioinformatician's guide to metagenomics
V Kunin, A Copeland, A Lapidus… - Microbiology and …, 2008 - Am Soc Microbiol
As random shotgun metagenomic projects proliferate and become the dominant source of
publicly available sequence data, procedures for the best practices in their execution and …
publicly available sequence data, procedures for the best practices in their execution and …
Assembly of the human intestinal microbiota
L Dethlefsen, PB Eckburg, EM Bik… - Trends in ecology & …, 2006 - cell.com
Complex microbial ecosystems occupy the skin, mucosa and alimentary tract of all
mammals, including humans. Recent advances have highlighted the tremendous diversity of …
mammals, including humans. Recent advances have highlighted the tremendous diversity of …
[PDF][PDF] The bacterial pan-genome: a new paradigm in microbiology
Bacterial strains belonging to the same species vary considerably in gene content. Thus, the
genetic repertoire of a given species (its “pan-genome”) is much larger than the gene …
genetic repertoire of a given species (its “pan-genome”) is much larger than the gene …
Ecosystem-specific selection pressures revealed through comparative population genomics
ML Coleman, SW Chisholm - Proceedings of the National …, 2010 - National Acad Sciences
Bacterial populations harbor vast genetic diversity that is continually shaped by abiotic and
biotic selective pressures, as well as by neutral processes. Individuals coexisting in the …
biotic selective pressures, as well as by neutral processes. Individuals coexisting in the …
The geomicrobiology of gold
Microorganisms capable of actively solubilizing and precipitating gold appear to play a
larger role in the biogeochemical cycling of gold than previously believed. Recent research …
larger role in the biogeochemical cycling of gold than previously believed. Recent research …
Global marine bacterial diversity peaks at high latitudes in winter
Genomic approaches to characterizing bacterial communities are revealing significant
differences in diversity and composition between environments. But bacterial distributions …
differences in diversity and composition between environments. But bacterial distributions …
Biogeography of the Sulfolobus islandicus pan-genome
ML Reno, NL Held, CJ Fields… - Proceedings of the …, 2009 - National Acad Sciences
Variation in gene content has been hypothesized to be the primary mode of adaptive
evolution in microorganisms; however, very little is known about the spatial and temporal …
evolution in microorganisms; however, very little is known about the spatial and temporal …