Scaling single-cell genomics from phenomenology to mechanism

A Tanay, A Regev - Nature, 2017 - nature.com
Three of the most fundamental questions in biology are how individual cells differentiate to
form tissues, how tissues function in a coordinated and flexible fashion and which gene …

Studying and modelling dynamic biological processes using time-series gene expression data

Z Bar-Joseph, A Gitter, I Simon - Nature Reviews Genetics, 2012 - nature.com
Biological processes are often dynamic, thus researchers must monitor their activity at
multiple time points. The most abundant source of information regarding such dynamic …

The human cell atlas

A Regev, SA Teichmann, ES Lander, I Amit, C Benoist… - elife, 2017 - elifesciences.org
The recent advent of methods for high-throughput single-cell molecular profiling has
catalyzed a growing sense in the scientific community that the time is ripe to complete the …

Circadian control of global gene expression patterns

CJ Doherty, SA Kay - Annual review of genetics, 2010 - annualreviews.org
An internal time-keeping mechanism has been observed in almost every organism studied
from archaea to humans. This circadian clock provides a competitive advantage in fitness …

The transcription factor FOXM1 (Forkhead box M1): proliferation-specific expression, transcription factor function, target genes, mouse models, and normal biological …

I Wierstra - Advances in cancer research, 2013 - Elsevier
Abstract FOXM1 (Forkhead box M1) is a typical proliferation-associated transcription factor,
which stimulates cell proliferation and exhibits a proliferation-specific expression pattern …

Mitotic exit and separation of mother and daughter cells

EL Weiss - Genetics, 2012 - academic.oup.com
Productive cell proliferation involves efficient and accurate splitting of the dividing cell into
two separate entities. This orderly process reflects coordination of diverse cytological events …

Genome-wide transcriptional analysis of the human cell cycle identifies genes differentially regulated in normal and cancer cells

Z Bar-Joseph, Z Siegfried, M Brandeis… - Proceedings of the …, 2008 - National Acad Sciences
Characterization of the transcriptional regulatory network of the normal cell cycle is essential
for understanding the perturbations that lead to cancer. However, the complete set of cycling …

Large scale comparison of global gene expression patterns in human and mouse

X Zheng-Bradley, J Rung, H Parkinson, A Brazma - Genome biology, 2010 - Springer
Background It is widely accepted that orthologous genes between species are conserved at
the sequence level and perform similar functions in different organisms. However, the level …

Topology and control of the cell-cycle-regulated transcriptional circuitry

SB Haase, C Wittenberg - Genetics, 2014 - academic.oup.com
Nearly 20% of the budding yeast genome is transcribed periodically during the cell division
cycle. The precise temporal execution of this large transcriptional program is controlled by a …

Characterization of Chinese rice wine taste attributes using liquid chromatographic analysis, sensory evaluation, and an electronic tongue

HY Yu, J Zhao, F Li, H Tian, X Ma - Journal of Chromatography B, 2015 - Elsevier
To evaluate the taste characteristics of Chinese rice wine, wine samples sourced from
different vintage years were analyzed using liquid chromatographic analysis, sensory …