[HTML][HTML] Structural variant calling: the long and the short of it
M Mahmoud, N Gobet, DI Cruz-Dávalos, N Mounier… - Genome biology, 2019 - Springer
Recent research into structural variants (SVs) has established their importance to medicine
and molecular biology, elucidating their role in various diseases, regulation of gene …
and molecular biology, elucidating their role in various diseases, regulation of gene …
[HTML][HTML] Genomics of evolutionary novelty in hybrids and polyploids
G Nieto Feliner, J Casacuberta, JF Wendel - Frontiers in genetics, 2020 - frontiersin.org
It has long been recognized that hybridization and polyploidy are prominent processes in
plant evolution. Although classically recognized as significant in speciation and adaptation …
plant evolution. Although classically recognized as significant in speciation and adaptation …
[HTML][HTML] Eight high-quality genomes reveal pan-genome architecture and ecotype differentiation of Brassica napus
JM Song, Z Guan, J Hu, C Guo, Z Yang, S Wang, D Liu… - Nature Plants, 2020 - nature.com
Rapeseed (Brassica napus) is the second most important oilseed crop in the world but the
genetic diversity underlying its massive phenotypic variations remains largely unexplored …
genetic diversity underlying its massive phenotypic variations remains largely unexplored …
CRISPR–Cas9-mediated induction of heritable chromosomal translocations in Arabidopsis
Clustered regularly interspaced short palindromic repeats (CRISPR)–CRISPR-associated
protein (Cas) technology has been applied in plant breeding mainly on genes for improving …
protein (Cas) technology has been applied in plant breeding mainly on genes for improving …
[HTML][HTML] A high-contiguity Brassica nigra genome localizes active centromeres and defines the ancestral Brassica genome
It is only recently, with the advent of long-read sequencing technologies, that we are
beginning to uncover previously uncharted regions of complex and inherently recursive …
beginning to uncover previously uncharted regions of complex and inherently recursive …
[HTML][HTML] An integrated peach genome structural variation map uncovers genes associated with fruit traits
J Guo, K Cao, C Deng, Y Li, G Zhu, W Fang, C Chen… - Genome biology, 2020 - Springer
Abstract Background Genome structural variations (SVs) have been associated with key
traits in a wide range of agronomically important species; however, SV profiles of peach and …
traits in a wide range of agronomically important species; however, SV profiles of peach and …
[HTML][HTML] A pangenome analysis pipeline provides insights into functional gene identification in rice
Background A pangenome aims to capture the complete genetic diversity within a species
and reduce bias in genetic analysis inherent in using a single reference genome. However …
and reduce bias in genetic analysis inherent in using a single reference genome. However …
Plant pangenomics: approaches, applications and advancements
Highlights•Pan-genomes represent the complex genomic diversity found in plant
species.•Novel approaches are under development to enable more complex pan-genome …
species.•Novel approaches are under development to enable more complex pan-genome …
[HTML][HTML] Plant pan-genomics: Recent advances, new challenges, and roads ahead
Pan-genomics can encompass most of the genetic diversity of a species or population and
has proved to be a powerful tool for studying genomic evolution and the origin and …
has proved to be a powerful tool for studying genomic evolution and the origin and …
The evolutionary origins of the cat attractant nepetalactone in catnip
Catnip or catmint (Nepeta spp.) is a flowering plant in the mint family (Lamiaceae) famed for
its ability to attract cats. This phenomenon is caused by the compound nepetalactone, a …
its ability to attract cats. This phenomenon is caused by the compound nepetalactone, a …