A three-ring circus: metabolism of the three proteogenic aromatic amino acids and their role in the health of plants and animals

A Parthasarathy, PJ Cross, RCJ Dobson… - Frontiers in molecular …, 2018 - frontiersin.org
Tyrosine, phenylalanine and tryptophan are the three aromatic amino acids (AAA) involved
in protein synthesis. These amino acids and their metabolism are linked to the synthesis of a …

Controlling allosteric networks in proteins

NV Dokholyan - Chemical reviews, 2016 - ACS Publications
Allosteric transition, defined as conformational changes induced by ligand binding, is one of
the fundamental properties of proteins. Allostery has been observed and characterized in …

[HTML][HTML] The CASTOR proteins are arginine sensors for the mTORC1 pathway

L Chantranupong, SM Scaria, RA Saxton, MP Gygi… - Cell, 2016 - cell.com
Amino acids signal to the mTOR complex I (mTORC1) growth pathway through the Rag
GTPases. Multiple distinct complexes regulate the Rags, including GATOR1, a GTPase …

X-ray scattering studies of protein structural dynamics

SP Meisburger, WC Thomas, MB Watkins… - Chemical …, 2017 - ACS Publications
X-ray scattering is uniquely suited to the study of disordered systems and thus has the
potential to provide insight into dynamic processes where diffraction methods fail. In …

Sensitive cells: enabling tools for static and dynamic control of microbial metabolic pathways

BF Cress, EA Trantas, F Ververidis, RJ Linhardt… - Current opinion in …, 2015 - Elsevier
Highlights•Recently developed genome engineering tools facilitate pathway control.•Novel
genetic regulators enable multi-level static and dynamic control.•State-of-the-art applications …

Metabolic engineering of Bacillus subtilis fueled by systems biology: recent advances and future directions

Y Liu, J Li, G Du, J Chen, L Liu - Biotechnology advances, 2017 - Elsevier
By combining advanced omics technology and computational modeling, systems biologists
have identified and inferred thousands of regulatory events and system-wide interactions of …

In-depth computational analysis of natural and artificial carbon fixation pathways

H Löwe, A Kremling - BioDesign Research, 2021 - Elsevier
In the recent years, engineering new-to-nature CO 2-and C1-fixing metabolic pathways
made a leap forward. New, artificial pathways promise higher yields and activity than natural …

Allosteric ACTion: the varied ACT domains regulating enzymes of amino-acid metabolism

EJM Lang, PJ Cross, G Mittelstädt, GB Jameson… - Current opinion in …, 2014 - Elsevier
Highlights•The ACT domain is a 60–70 residue domain with a topology.•The ACT domain is
associated with the allosteric regulation of enzymes of amino-acid metabolism.•ACT …

Structural basis for ligand-dependent dimerization of phenylalanine hydroxylase regulatory domain

D Patel, J Kopec, F Fitzpatrick, TJ McCorvie… - Scientific reports, 2016 - nature.com
The multi-domain enzyme phenylalanine hydroxylase (PAH) catalyzes the hydroxylation of
dietary I-phenylalanine (Phe) to I-tyrosine. Inherited mutations that result in PAH enzyme …

Core Genes Evolve Rapidly in the Long-Term Evolution Experiment with Escherichia coli

R Maddamsetti, PJ Hatcher, AG Green… - Genome biology and …, 2017 - academic.oup.com
Bacteria can evolve rapidly under positive selection owing to their vast numbers, allowing
their genes to diversify by adapting to different environments. We asked whether the same …