Chemical identification and indexing in full-text articles: an overview of the NLM-Chem track at BioCreative VII

R Leaman, R Islamaj, V Adams, MA Alliheedi… - Database, 2023 - academic.oup.com
Abstract The BioCreative National Library of Medicine (NLM)-Chem track calls for a
community effort to fine-tune automated recognition of chemical names in the biomedical …

Classifying literature mentions of biological pathogens as experimentally studied using natural language processing

AJ Jimeno Yepes, K Verspoor - Journal of Biomedical Semantics, 2023 - Springer
Background Information pertaining to mechanisms, management and treatment of disease-
causing pathogens including viruses and bacteria is readily available from research …

[PDF][PDF] The read-biomed team in livingner task 1 (2022): Adaptation of an english annotation system to spanish

AJ Yepes, K Verspoor - LiverNER challenge, IberLEF, 2022 - ceur-ws.org
We describe the work of the READ-BioMed team for the preparation of a submission to the
LivingNER Species Named Entity Recognition (NER) Task (Task 1) in 2022. We had …

[PDF][PDF] Named Entity Recognition for LivingNER-Species based on BERT and Span Detection.

S Han, H Ding - IberLEF@ SEPLN, 2022 - ceur-ws.org
Recently, organisms/species have been attracted to NLP studies, especially for non-English
content. So, we need high-quality guidelines and corpora to determine where species or …