Integrating bioinformatics approaches for a comprehensive interpretation of metabolomics datasets

DK Barupal, S Fan, O Fiehn - Current opinion in biotechnology, 2018 - Elsevier
Highlights•Statistics has become a commodity and serves as entry into data interpretation.•
Metabolic pathway databases are incomplete and disagree on pathway …

Unravelling the genomic architecture of bull fertility in Holstein cattle

Y Han, F Peñagaricano - BMC genetics, 2016 - Springer
Background Fertility is considered an important economic trait in dairy cattle. Most studies
have investigated cow fertility while bull fertility has received much less consideration. The …

RNA-Seq analysis of IL-1B and IL-36 responses in epidermal keratinocytes identifies a shared MyD88-dependent gene signature

WR Swindell, MA Beamer, MK Sarkar, S Loftus… - Frontiers in …, 2018 - frontiersin.org
IL-36 cytokines have recently emerged as mediators of inflammation in autoimmune
conditions including psoriasis vulgaris (PsV) and generalized pustular psoriasis (GPP). This …

Genetic dissection of bull fertility in US Jersey dairy cattle

FM Rezende, GO Dietsch, F Peñagaricano - Animal genetics, 2018 - Wiley Online Library
The service sire has been recognized as an important factor affecting herd fertility in dairy
cattle. Recent studies suggest that genetic factors explain part of the difference in fertility …

Uncovering hypergraphs of cell-cell interaction from single cell RNA-sequencing data

K Tsuyuzaki, M Ishii, I Nikaido - BioRxiv, 2019 - biorxiv.org
Complex biological systems can be described as a multitude of cell-cell interactions (CCIs).
Recent single-cell RNA-sequencing technologies have enabled the detection of CCIs and …

[HTML][HTML] Genome-wide association for milk production traits and somatic cell score in different lactation stages of Ayrshire, Holstein, and Jersey dairy cattle

HR Oliveira, JP Cant, LF Brito, FLB Feitosa… - Journal of dairy …, 2019 - Elsevier
We performed genome-wide association analyses for milk, fat, and protein yields and
somatic cell score based on lactation stages in the first 3 parities of Canadian Ayrshire …

Using meshes for MeSH term enrichment and semantic analyses

G Yu - Bioinformatics, 2018 - academic.oup.com
Abstract Summary Medical Subject Headings (MeSH) is the NLM controlled vocabulary
used to manually index articles for MEDLINE/PubMed. MeSH provides unique and …

Impact of aging on meningeal gene expression

M Neutzner, C Kohler, S Frank, HE Killer… - Fluids and Barriers of …, 2023 - Springer
Background The three-layered meninges cover and protect the central nervous system and
form the interface between cerebrospinal fluid and the brain. They are host to a lymphatic …

[HTML][HTML] Single-step genome-wide association for longitudinal traits of Canadian Ayrshire, Holstein, and Jersey dairy cattle

HR Oliveira, DAL Lourenco, Y Masuda, I Misztal… - Journal of dairy …, 2019 - Elsevier
Estimating single nucleotide polymorphism (SNP) effects over time is essential to identify
and validate candidate genes (or quantitative trait loci) associated with time-dependent …

Genomic study and Medical Subject Headings enrichment analysis of early pregnancy rate and antral follicle numbers in Nelore heifers,

GAO Júnior, BC Perez, JB Cole… - Journal of Animal …, 2017 - academic.oup.com
Zebu animals (Bos indicus) are known to take longer to reach puberty compared with taurine
animals (Bos taurus), limiting the supply of animals for harvest or breeding and impacting …