Variants of uncertain significance in the era of high-throughput genome sequencing: a lesson from breast and ovary cancers

G Federici, S Soddu - Journal of Experimental & Clinical Cancer Research, 2020 - Springer
The promising expectations about personalized medicine have opened the path to routine
large-scale sequencing and increased the importance of genetic counseling for hereditary …

Where genotype is not predictive of phenotype: towards an understanding of the molecular basis of reduced penetrance in human inherited disease

DN Cooper, M Krawczak, C Polychronakos… - Human genetics, 2013 - Springer
Some individuals with a particular disease-causing mutation or genotype fail to express
most if not all features of the disease in question, a phenomenon that is known as 'reduced …

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics …

S Richards, N Aziz, S Bale, D Bick, S Das… - Genetics in …, 2015 - nature.com
Abstract Disclaimer: These ACMG Standards and Guidelines were developed primarily as
an educational resource for clinical laboratory geneticists to help them provide quality …

PMut: a web-based tool for the annotation of pathological variants on proteins, 2017 update

V López-Ferrando, A Gazzo, X De La Cruz… - Nucleic acids …, 2017 - academic.oup.com
We present here a full update of the PMut predictor, active since 2005 and with a large
acceptance in the field of predicting Mendelian pathological mutations. PMut internal engine …

Sequence variant classification and reporting: recommendations for improving the interpretation of cancer susceptibility genetic test results

SE Plon, DM Eccles, D Easton, WD Foulkes… - Human …, 2008 - Wiley Online Library
Genetic testing of cancer susceptibility genes is now widely applied in clinical practice to
predict risk of developing cancer. In general, sequence‐based testing of germline DNA is …

Functional annotations improve the predictive score of human disease‐related mutations in proteins

R Calabrese, E Capriotti, P Fariselli… - Human …, 2009 - Wiley Online Library
Single nucleotide polymorphisms (SNPs) are the simplest and most frequent form of human
DNA variation, also valuable as genetic markers of disease susceptibility. The most …

Bioinformatics challenges for personalized medicine

GH Fernald, E Capriotti, R Daneshjou… - …, 2011 - academic.oup.com
Motivation: Widespread availability of low-cost, full genome sequencing will introduce new
challenges for bioinformatics. Results: This review outlines recent developments in …

Personalized diagnosis and management of congenital cataract by next-generation sequencing

RL Gillespie, J O'Sullivan, J Ashworth, S Bhaskar… - Ophthalmology, 2014 - Elsevier
Purpose To assess the utility of integrating genomic data from next-generation sequencing
and phenotypic data to enhance the diagnosis of bilateral congenital cataract (CC). Design …

Rare variants in the ATMgene and risk of breast cancer

DE Goldgar, S Healey, JG Dowty, L Da Silva… - Breast Cancer …, 2011 - Springer
Introduction The ataxia-telangiectasia mutated (ATM) gene (MIM ID 208900) encodes a
protein kinase that plays a significant role in the activation of cellular responses to DNA …

Prediction of missense mutation functionality depends on both the algorithm and sequence alignment employed

S Hicks, DA Wheeler, SE Plon, M Kimmel - Human mutation, 2011 - Wiley Online Library
Multiple algorithms are used to predict the impact of missense mutations on protein structure
and function using algorithm‐generated sequence alignments or manually curated …