Does CTCF mediate between nuclear organization and gene expression?

R Ohlsson, V Lobanenkov, E Klenova - Bioessays, 2010 - Wiley Online Library
The multifunctional zinc‐finger protein CCCTC‐binding factor (CTCF) is a very strong
candidate for the role of coordinating the expression level of coding sequences with their …

Deciphering Hi-C: from 3D genome to function

S Kong, Y Zhang - Cell biology and toxicology, 2019 - Springer
Hi-C is a commonly used technology in 3D genomics which can depict global chromatin
interactions across eukaryotic genome. Integrating with different datasets, it can also be …

[HTML][HTML] Autosomal-dominant distal myopathy associated with a recurrent missense mutation in the gene encoding the nuclear matrix protein, matrin 3

J Senderek, SM Garvey, M Krieger… - The American Journal of …, 2009 - cell.com
Distal myopathies represent a heterogeneous group of inherited skeletal muscle disorders.
One type of adult-onset, progressive autosomal-dominant distal myopathy, frequently …

[HTML][HTML] Human interphase chromosomes: a review of available molecular cytogenetic technologies

SG Vorsanova, YB Yurov, IY Iourov - Molecular cytogenetics, 2010 - Springer
Human karyotype is usually studied by classical cytogenetic (banding) techniques. To
perform it, one has to obtain metaphase chromosomes of mitotic cells. This leads to the …

Chromatin folding–from biology to polymer models and back

M Tark-Dame, R van Driel… - Journal of cell …, 2011 - journals.biologists.com
There is rapidly growing evidence that folding of the chromatin fibre inside the interphase
nucleus has an important role in the regulation of gene expression. In particular, the …

[HTML][HTML] Gravitational force—Induced 3D chromosomal conformational changes are associated with rapid transcriptional response in human T cells

C Vahlensieck, CS Thiel, Y Zhang, A Huge… - International Journal of …, 2021 - mdpi.com
The mechanisms underlying gravity perception in mammalian cells are unknown. We have
recently discovered that the transcriptome of cells in the immune system, which is the most …

[HTML][HTML] Spatial genome organization and its emerging role as a potential diagnosis tool

KJ Meaburn - Frontiers in genetics, 2016 - frontiersin.org
In eukaryotic cells the genome is highly spatially organized. Functional relevance of higher
order genome organization is implied by the fact that specific genes, and even whole …

[HTML][HTML] Nucleolar sub-compartments in motion during rRNA synthesis inhibition: Contraction of nucleolar condensed chromatin and gathering of fibrillar centers are …

P Tchelidze, A Benassarou, H Kaplan… - PLoS …, 2017 - journals.plos.org
The nucleolus produces the large polycistronic transcript (47S precursor) containing the
18S, 5.8 S and 28S rRNA sequences and hosts most of the nuclear steps of pre-rRNA …

Comparison of the somatic TADs and lampbrush chromomere-loop complexes in transcriptionally active prophase I oocytes

T Kulikova, A Maslova, P Starshova… - Chromosoma, 2022 - Springer
In diplotene oocyte nuclei of all vertebrate species, except mammals, chromosomes lack
interchromosomal contacts and chromatin is linearly compartmentalized into distinct …

[HTML][HTML] The interplay of seizures-induced axonal sprouting and transcription-dependent Bdnf repositioning in the model of temporal lobe epilepsy

A Skupien-Jaroszek, A Walczak, I Czaban, KK Pels… - PLoS …, 2021 - journals.plos.org
The Brain-Derived Neurotrophic Factor is one of the most important trophic proteins in the
brain. The role of this growth factor in neuronal plasticity, in health and disease, has been …