Membrane protein structure, function, and dynamics: a perspective from experiments and theory

Z Cournia, TW Allen, I Andricioaei, B Antonny… - The Journal of …, 2015 - Springer
Membrane proteins mediate processes that are fundamental for the flourishing of biological
cells. Membrane-embedded transporters move ions and larger solutes across membranes; …

The rhomboid-like superfamily: molecular mechanisms and biological roles

M Freeman - Annual review of cell and developmental biology, 2014 - annualreviews.org
The rhomboid proteases were first discovered as regulators of Drosophila EGF receptor
signaling; soon after, it was recognized that they represented the founder members of a …

Structural basis of Notch recognition by human γ-secretase

G Yang, R Zhou, Q Zhou, X Guo, C Yan, M Ke, J Lei… - Nature, 2019 - nature.com
Aberrant cleavage of Notch by γ-secretase leads to several types of cancer, but how γ-
secretase recognizes its substrate remains unknown. Here we report the cryo-electron …

The opening dynamics of the lateral gate regulates the activity of rhomboid proteases

C Bohg, C Öster, B Türkaydin, M Lisurek… - Science …, 2023 - science.org
Rhomboid proteases hydrolyze substrate helices within the lipid bilayer to release soluble
domains from the membrane. Here, we investigate the mechanism of activity regulation for …

Mechanism of farnesylated CAAX protein processing by the intramembrane protease Rce1

I Manolaridis, K Kulkarni, RB Dodd, S Ogasawara… - Nature, 2013 - nature.com
CAAX proteins have essential roles in multiple signalling pathways, controlling processes
such as proliferation, differentiation and carcinogenesis. The∼ 120 mammalian CAAX …

[HTML][HTML] Proteolysis inside the membrane is a rate-governed reaction not driven by substrate affinity

SW Dickey, RP Baker, S Cho, S Urban - Cell, 2013 - cell.com
Enzymatic cleavage of transmembrane anchors to release proteins from the membrane
controls diverse signaling pathways and is implicated in more than a dozen diseases. How …

The molecular, cellular and pathophysiological roles of iRhom pseudoproteases

I Dulloo, S Muliyil, M Freeman - Open biology, 2019 - royalsocietypublishing.org
iRhom proteins are catalytically inactive relatives of rhomboid intramembrane proteases.
There is a rapidly growing body of evidence that these pseudoenzymes have a central …

Membrane immersion allows rhomboid proteases to achieve specificity by reading transmembrane segment dynamics

SM Moin, S Urban - elife, 2012 - elifesciences.org
Rhomboid proteases reside within cellular membranes, but the advantage of this unusual
environment is unclear. We discovered membrane immersion allows substrates to be …

Substrate binding and specificity of rhomboid intramembrane protease revealed by substrate–peptide complex structures

S Zoll, S Stanchev, J Began, J Škerle, M Lepšík… - The EMBO …, 2014 - embopress.org
The mechanisms of intramembrane proteases are incompletely understood due to the lack
of structural data on substrate complexes. To gain insight into substrate binding by rhomboid …

The rhomboid superfamily: structural mechanisms and chemical biology opportunities

A Tichá, B Collis, K Strisovsky - Trends in biochemical sciences, 2018 - cell.com
The rhomboid superfamily of transmembrane (TM) proteins includes intramembrane serine
proteases and several classes of pseudoprotease. Rhomboid-like proteins occur widely …