X-ray computed tomography for 3D plant imaging

A Piovesan, V Vancauwenberghe… - Trends in Plant …, 2021 - cell.com
X-ray computed tomography (CT) is a valuable tool for 3D imaging of plant tissues and
organs. Applications include the study of plant development and organ morphogenesis, as …

Advances in optical phenotyping of cereal crops

D Sun, K Robbins, N Morales, Q Shu, H Cen - Trends in plant science, 2022 - cell.com
Optical sensors and sensing-based phenotyping techniques have become mainstream
approaches in high-throughput phenotyping for improving trait selection and genetic gains …

[HTML][HTML] TCP transcription factors in plant reproductive development: juggling multiple roles

IL Viola, DH Gonzalez - Biomolecules, 2023 - mdpi.com
TEOSINTE BRANCHED1/CYCLOIDEA/PROLIFERATING CELL FACTOR (TCP)
transcription factors (TFs) are plant-specific transcriptional regulators exerting multiple …

Direct and accurate feature extraction from 3D point clouds of plants using RANSAC

M Ghahremani, K Williams, F Corke… - … and Electronics in …, 2021 - Elsevier
While point clouds hold promise for measuring the geometrical features of 3D objects, their
application to plants remains problematic. Plants are three dimensional (3D) organisms …

[HTML][HTML] How to make sense of 3D representations for plant phenotyping: a compendium of processing and analysis techniques

N Harandi, B Vandenberghe, J Vankerschaver… - Plant Methods, 2023 - Springer
Computer vision technology is moving more and more towards a three-dimensional
approach, and plant phenotyping is following this trend. However, despite its potential, the …

X-ray microscopy enables multiscale high-resolution 3D imaging of plant cells, tissues, and organs

KE Duncan, KJ Czymmek, N Jiang, AC Thies… - Plant …, 2022 - academic.oup.com
Capturing complete internal anatomies of plant organs and tissues within their relevant
morphological context remains a key challenge in plant science. While plant growth and …

Large-scale field phenotyping using backpack LiDAR and CropQuant-3D to measure structural variation in wheat

Y Zhu, G Sun, G Ding, J Zhou, M Wen, S Jin… - Plant …, 2021 - academic.oup.com
Plant phenomics bridges the gap between traits of agricultural importance and genomic
information. Limitations of current field-based phenotyping solutions include mobility …

[HTML][HTML] Deep segmentation of point clouds of wheat

M Ghahremani, K Williams, FMK Corke… - Frontiers in Plant …, 2021 - frontiersin.org
The 3D analysis of plants has become increasingly effective in modeling the relative
structure of organs and other traits of interest. In this paper, we introduce a novel pattern …

[HTML][HTML] High-throughput phenotyping of morphological seed and fruit characteristics using X-ray computed tomography

W Liu, C Liu, J Jin, D Li, Y Fu, X Yuan - Frontiers in plant science, 2020 - frontiersin.org
Traditional seed and fruit phenotyping are mainly accomplished by manual measurement or
extraction of morphological properties from two-dimensional images. These methods are not …

[HTML][HTML] TopoRoot: a method for computing hierarchy and fine-grained traits of maize roots from 3D imaging

D Zeng, M Li, N Jiang, Y Ju, H Schreiber, E Chambers… - Plant methods, 2021 - Springer
Background 3D imaging, such as X-ray CT and MRI, has been widely deployed to study
plant root structures. Many computational tools exist to extract coarse-grained features from …