Microbial diversity in extreme environments

WS Shu, LN Huang - Nature Reviews Microbiology, 2022 - nature.com
A wide array of microorganisms, including many novel, phylogenetically deeply rooted taxa,
survive and thrive in extreme environments. These unique and reduced-complexity …

Metagenomics of thermophiles with a focus on discovery of novel thermozymes

ME DeCastro, E Rodríguez-Belmonte… - Frontiers in …, 2016 - frontiersin.org
Microbial populations living in environments with temperatures above 50° C (thermophiles)
have been widely studied, increasing our knowledge in the composition and function of …

Fast and sensitive taxonomic classification for metagenomics with Kaiju

P Menzel, KL Ng, A Krogh - Nature communications, 2016 - nature.com
Metagenomics emerged as an important field of research not only in microbial ecology but
also for human health and disease, and metagenomic studies are performed on increasingly …

Bioinformatic approaches for studying the microbiome of fermented food

LH Walsh, M Coakley, AM Walsh… - Critical Reviews in …, 2023 - Taylor & Francis
High-throughput DNA sequencing-based approaches continue to revolutionise our
understanding of microbial ecosystems, including those associated with fermented foods …

Metagenomic analysis of hot springs in Central India reveals hydrocarbon degrading thermophiles and pathways essential for survival in extreme environments

R Saxena, DB Dhakan, P Mittal, P Waiker… - Frontiers in …, 2017 - frontiersin.org
Extreme ecosystems such as hot springs are of great interest as a source of novel
extremophilic species, enzymes, metabolic functions for survival and biotechnological …

RaFAH: Host prediction for viruses of Bacteria and Archaea based on protein content

FH Coutinho, A Zaragoza-Solas, M López-Pérez… - Patterns, 2021 - cell.com
Culture-independent approaches have recently shed light on the genomic diversity of
viruses of prokaryotes. One fundamental question when trying to understand their ecological …

Comparative analysis of microbial diversity across temperature gradients in hot springs from Yellowstone and Iceland

PT Podar, Z Yang, SH Björnsdóttir… - Frontiers in Microbiology, 2020 - frontiersin.org
Geothermal hot springs are a natural setting to study microbial adaptation to a wide range of
temperatures reaching up to boiling. Temperature gradients lead to distinct microbial …

The influence of temperature and pH on bacterial community composition of microbial mats in hot springs from Costa Rica

L Uribe‐Lorío, L Brenes-Guillén… - …, 2019 - Wiley Online Library
We used the 16S rRNA gene pyrosequencing approach to investigate the microbial diversity
and community composition in several Costa Rican hot springs alongside the latitudinal axis …

A new symbiotic nanoarchaeote (Candidatus Nanoclepta minutus) and its host (Zestosphaera tikiterensis gen. nov., sp. nov.) from a New Zealand hot spring

ES John, Y Liu, M Podar, MB Stott, J Meneghin… - Systematic and applied …, 2019 - Elsevier
Abstract Three thermophilic Nanoarchaeota-Crenarchaeota symbiotic systems have been
described. We obtained another stable anaerobic enrichment culture at 80° C, pH 6.0 from a …

Microbial diversity and autotrophic activity in Kamchatka hot springs

AY Merkel, NV Pimenov, II Rusanov, AI Slobodkin… - Extremophiles, 2017 - Springer
Abstract Microbial communities of Kamchatka Peninsula terrestrial hot springs were studied
using molecular, radioisotopic and cultural approaches. Analysis of 16S rRNA gene …