High throughput microscopy: from raw images to discoveries

R Wollman, N Stuurman - Journal of cell science, 2007 - journals.biologists.com
Technological advances in automated microscopy now allow rapid acquisition of many
images without human intervention, images that can be used for large-scale screens. The …

Segmentation of clustered nuclei with shape markers and marking function

J Cheng, JC Rajapakse - IEEE transactions on Biomedical …, 2008 - ieeexplore.ieee.org
We present a method to separate clustered nuclei from fluorescence microscopy cellular
images, using shape markers and marking function in a watershed-like algorithm. Shape …

Transcriptional bursting and co-bursting regulation by steroid hormone release pattern and transcription factor mobility

DA Stavreva, DA Garcia, G Fettweis, PR Gudla, GF Zaki… - Molecular cell, 2019 - cell.com
Genes are transcribed in a discontinuous pattern referred to as RNA bursting, but the
mechanisms regulating this process are unclear. Although many physiological signals …

Attentive neural cell instance segmentation

J Yi, P Wu, M Jiang, Q Huang, DJ Hoeppner… - Medical image …, 2019 - Elsevier
Neural cell instance segmentation, which aims at joint detection and segmentation of every
neural cell in a microscopic image, is essential to many neuroscience applications. The …

Segmentation, inference and classification of partially overlapping nanoparticles

C Park, JZ Huang, JX Ji, Y Ding - IEEE transactions on pattern …, 2012 - ieeexplore.ieee.org
This paper presents a method that enables automated morphology analysis of partially
overlapping nanoparticles in electron micrographs. In the undertaking of morphology …

The quantitative-phase dynamics of apoptosis and lytic cell death

T Vicar, M Raudenska, J Gumulec, J Balvan - Scientific reports, 2020 - nature.com
Cell viability and cytotoxicity assays are highly important for drug screening and cytotoxicity
tests of antineoplastic or other therapeutic drugs. Even though biochemical-based tests are …

Automated segmentation of tissue images for computerized IHC analysis

S Di Cataldo, E Ficarra, A Acquaviva, E Macii - Computer methods and …, 2010 - Elsevier
This paper presents two automated methods for the segmentation of immunohistochemical
tissue images that overcome the limitations of the manual approach as well as of the existing …

Enabling user‐guided segmentation and tracking of surface‐labeled cells in time‐lapse image sets of living tissues

DN Mashburn, HE Lynch, X Ma, MS Hutson - Cytometry Part A, 2012 - Wiley Online Library
To study the process of morphogenesis, one often needs to collect and segment time‐lapse
images of living tissues to accurately track changing cellular morphology. This task typically …

Automated yeast cells segmentation and counting using a parallel U-Net based two-stage framework

Y Kong, H Li, Y Ren, GZ Genchev, X Wang, H Zhao… - OSA …, 2020 - opg.optica.org
Yeast fluorescence microscopic images are widely used to observe the living conditions and
survival of yeast cells under experimental conditions. Accurate cell counting provides key …

Cell segmentation by combining marker-controlled watershed and deep learning

F Lux, P Matula - arXiv preprint arXiv:2004.01607, 2020 - arxiv.org
We propose a cell segmentation method for analyzing images of densely clustered cells.
The method combines the strengths of marker-controlled watershed transformation and a …