High throughput microscopy: from raw images to discoveries
R Wollman, N Stuurman - Journal of cell science, 2007 - journals.biologists.com
Technological advances in automated microscopy now allow rapid acquisition of many
images without human intervention, images that can be used for large-scale screens. The …
images without human intervention, images that can be used for large-scale screens. The …
Segmentation of clustered nuclei with shape markers and marking function
J Cheng, JC Rajapakse - IEEE transactions on Biomedical …, 2008 - ieeexplore.ieee.org
We present a method to separate clustered nuclei from fluorescence microscopy cellular
images, using shape markers and marking function in a watershed-like algorithm. Shape …
images, using shape markers and marking function in a watershed-like algorithm. Shape …
Transcriptional bursting and co-bursting regulation by steroid hormone release pattern and transcription factor mobility
Genes are transcribed in a discontinuous pattern referred to as RNA bursting, but the
mechanisms regulating this process are unclear. Although many physiological signals …
mechanisms regulating this process are unclear. Although many physiological signals …
Attentive neural cell instance segmentation
Neural cell instance segmentation, which aims at joint detection and segmentation of every
neural cell in a microscopic image, is essential to many neuroscience applications. The …
neural cell in a microscopic image, is essential to many neuroscience applications. The …
Segmentation, inference and classification of partially overlapping nanoparticles
This paper presents a method that enables automated morphology analysis of partially
overlapping nanoparticles in electron micrographs. In the undertaking of morphology …
overlapping nanoparticles in electron micrographs. In the undertaking of morphology …
The quantitative-phase dynamics of apoptosis and lytic cell death
Cell viability and cytotoxicity assays are highly important for drug screening and cytotoxicity
tests of antineoplastic or other therapeutic drugs. Even though biochemical-based tests are …
tests of antineoplastic or other therapeutic drugs. Even though biochemical-based tests are …
Automated segmentation of tissue images for computerized IHC analysis
This paper presents two automated methods for the segmentation of immunohistochemical
tissue images that overcome the limitations of the manual approach as well as of the existing …
tissue images that overcome the limitations of the manual approach as well as of the existing …
Enabling user‐guided segmentation and tracking of surface‐labeled cells in time‐lapse image sets of living tissues
To study the process of morphogenesis, one often needs to collect and segment time‐lapse
images of living tissues to accurately track changing cellular morphology. This task typically …
images of living tissues to accurately track changing cellular morphology. This task typically …
Automated yeast cells segmentation and counting using a parallel U-Net based two-stage framework
Y Kong, H Li, Y Ren, GZ Genchev, X Wang, H Zhao… - OSA …, 2020 - opg.optica.org
Yeast fluorescence microscopic images are widely used to observe the living conditions and
survival of yeast cells under experimental conditions. Accurate cell counting provides key …
survival of yeast cells under experimental conditions. Accurate cell counting provides key …
Cell segmentation by combining marker-controlled watershed and deep learning
We propose a cell segmentation method for analyzing images of densely clustered cells.
The method combines the strengths of marker-controlled watershed transformation and a …
The method combines the strengths of marker-controlled watershed transformation and a …