Reliability and reproducibility issues in DNA microarray measurements

S Draghici, P Khatri, AC Eklund, Z Szallasi - TRENDS in Genetics, 2006 - cell.com
DNA microarrays enable researchers to monitor the expression of thousands of genes
simultaneously. However, the current technology has several limitations. Here we discuss …

[HTML][HTML] Diagnostics based on nucleic acid sequence variant profiling: PCR, hybridization, and NGS approaches

D Khodakov, C Wang, DY Zhang - Advanced drug delivery reviews, 2016 - Elsevier
Nucleic acid sequence variations have been implicated in many diseases, and reliable
detection and quantitation of DNA/RNA biomarkers can inform effective therapeutic action …

Comparative analysis of proteome and transcriptome variation in mouse

A Ghazalpour, B Bennett, VA Petyuk, L Orozco… - PLoS …, 2011 - journals.plos.org
The relationships between the levels of transcripts and the levels of the proteins they encode
have not been examined comprehensively in mammals, although previous work in plants …

In vitro propagation and transcriptional profiling of human mammary stem/progenitor cells

G Dontu, WM Abdallah, JM Foley… - Genes & …, 2003 - genesdev.cshlp.org
Although the existence of mammary stem cells has been suggested by serial transplantation
studies in mice, their identification has been hindered by the lack of specific surface markers …

Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements

J Dostie, TA Richmond, RA Arnaout, RR Selzer… - Genome …, 2006 - genome.cshlp.org
Physical interactions between genetic elements located throughout the genome play
important roles in gene regulation and can be identified with the Chromosome Conformation …

Capturing and profiling adult hair follicle stem cells

RJ Morris, Y Liu, L Marles, Z Yang, C Trempus… - Nature …, 2004 - nature.com
The hair follicle bulge possesses putative epithelial stem cells. Characterization of these
cells has been hampered by the inability to target bulge cells genetically. Here, we use a …

Blocking FSH induces thermogenic adipose tissue and reduces body fat

P Liu, Y Ji, T Yuen, E Rendina-Ruedy, VE DeMambro… - Nature, 2017 - nature.com
Menopause is associated with bone loss and enhanced visceral adiposity. A polyclonal
antibody that targets the β-subunit of the pituitary hormone follicle-stimulating hormone (Fsh) …

" Stemness": transcriptional profiling of embryonic and adult stem cells

M Ramalho-Santos, S Yoon, Y Matsuzaki, RC Mulligan… - Science, 2002 - science.org
The transcriptional profiles of mouse embryonic, neural, and hematopoietic stem cells were
compared to define a genetic program for stem cells. A total of 216 genes are enriched in all …

Microarray Analysis of Pseudomonas aeruginosa Quorum-Sensing Regulons: Effects of Growth Phase and Environment

VE Wagner, D Bushnell, L Passador… - Journal of …, 2003 - Am Soc Microbiol
Bacterial communication via quorum sensing (QS) has been reported to be important in the
production of virulence factors, antibiotic sensitivity, and biofilm development. Two QS …

Prediction of survival in diffuse large-B-cell lymphoma based on the expression of six genes

IS Lossos, DK Czerwinski, AA Alizadeh… - … England Journal of …, 2004 - Mass Medical Soc
Background Several gene-expression signatures can be used to predict the prognosis in
diffuse large-B-cell lymphoma, but the lack of practical tests for a genome-scale analysis has …