Targeting RNA structures with small molecules
JL Childs-Disney, X Yang, QMR Gibaut… - Nature Reviews Drug …, 2022 - nature.com
RNA adopts 3D structures that confer varied functional roles in human biology and
dysfunction in disease. Approaches to therapeutically target RNA structures with small …
dysfunction in disease. Approaches to therapeutically target RNA structures with small …
RNA structural dynamics as captured by molecular simulations: a comprehensive overview
With both catalytic and genetic functions, ribonucleic acid (RNA) is perhaps the most
pluripotent chemical species in molecular biology, and its functions are intimately linked to …
pluripotent chemical species in molecular biology, and its functions are intimately linked to …
Decoding the identification mechanism of an SAM-III Riboswitch on ligands through multiple independent Gaussian-accelerated molecular dynamics simulations
J Chen, Q Zeng, W Wang, H Sun… - Journal of Chemical …, 2022 - ACS Publications
S-Adenosyl-l-methionine (SAM)-responsive riboswitches play a central role in the regulation
of bacterial gene expression at the level of transcription attenuation or translation inhibition …
of bacterial gene expression at the level of transcription attenuation or translation inhibition …
[HTML][HTML] The noncoding RNA revolution—trashing old rules to forge new ones
TR Cech, JA Steitz - Cell, 2014 - cell.com
Noncoding RNAs (ncRNAs) accomplish a remarkable variety of biological functions. They
regulate gene expression at the levels of transcription, RNA processing, and translation …
regulate gene expression at the levels of transcription, RNA processing, and translation …
A decade of riboswitches
A Serganov, E Nudler - Cell, 2013 - cell.com
Riboswitches were discovered in 2002 in bacteria as RNA-based intracellular sensors of
vitamin derivatives. During the last decade, naturally occurring RNA sensor elements have …
vitamin derivatives. During the last decade, naturally occurring RNA sensor elements have …
RNA force field with accuracy comparable to state-of-the-art protein force fields
Molecular dynamics (MD) simulation has become a powerful tool for characterizing at an
atomic level of detail the conformational changes undergone by proteins. The application of …
atomic level of detail the conformational changes undergone by proteins. The application of …
Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography
Riboswitches are structural RNA elements that are generally located in the 5′ untranslated
region of messenger RNA. During regulation of gene expression, ligand binding to the …
region of messenger RNA. During regulation of gene expression, ligand binding to the …
Fluorescence imaging of cellular metabolites with RNA
Genetically encoded sensors are powerful tools for imaging intracellular metabolites and
signaling molecules. However, developing sensors is challenging because they require …
signaling molecules. However, developing sensors is challenging because they require …
Structural basis for activity of highly efficient RNA mimics of green fluorescent protein
GFP and its derivatives revolutionized the study of proteins. Spinach is a recently reported in
vitro–evolved RNA mimic of GFP, which as genetically encoded fusions makes possible live …
vitro–evolved RNA mimic of GFP, which as genetically encoded fusions makes possible live …
Prospects for riboswitch discovery and analysis
RR Breaker - Molecular cell, 2011 - cell.com
An expanding number of metabolite-binding riboswitch classes are being discovered in the
noncoding portions of bacterial genomes. Findings over the last decade indicate that …
noncoding portions of bacterial genomes. Findings over the last decade indicate that …