Nucleocytoplasmic transport: the soluble phase

IW Mattaj, L Englmeier - Annual review of biochemistry, 1998 - annualreviews.org
Active transport between the nucleus and cytoplasm involves primarily three classes of
macromolecules: substrates, adaptors, and receptors. Some transport substrates bind …

On the importance of being co-transcriptional

KM Neugebauer - Journal of cell science, 2002 - journals.biologists.com
Intense research in recent years has shown that many pre-mRNA processing events are co-
transcriptional or at least begin during RNA synthesis by RNA polymerase II (Pol II). But is it …

Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain

A Ameur, A Zaghlool, J Halvardson… - Nature structural & …, 2011 - nature.com
Transcriptome sequencing allows for analysis of mature RNAs at base pair resolution. Here
we show that RNA-seq can also be used for studying nascent RNAs undergoing …

Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila

YL Khodor, J Rodriguez, KC Abruzzi… - Genes & …, 2011 - genesdev.cshlp.org
To determine the prevalence of cotranscriptional splicing in Drosophila, we sequenced
nascent RNA transcripts from Drosophila S2 cells as well as from Drosophila heads. Eighty …

Role of the modular domains of SR proteins in subnuclear localization and alternative splicing specificity

JF Cáceres, T Misteli, GR Screaton… - The Journal of cell …, 1997 - rupress.org
SR proteins are required for constitutive pre-mRNA splicing and also regulate alternative
splice site selection in a concentration-dependent manner. They have a modular structure …

Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells

I Listerman, AK Sapra, KM Neugebauer - Nature structural & molecular …, 2006 - nature.com
Coupling between transcription and RNA processing is a key gene regulatory mechanism.
Here we use chromatin immunoprecipitation to detect transcription-dependent accumulation …

Serine phosphorylation of SR proteins is required for their recruitment to sites of transcription in vivo

T Misteli, JF Cáceres, JQ Clement, AR Krainer… - The Journal of cell …, 1998 - rupress.org
Expression of most RNA polymerase II transcripts requires the coordinated execution of
transcription, splicing, and 3′ processing. We have previously shown that upon …

A nuclear cap-binding complex binds Balbiani ring pre-mRNA cotranscriptionally and accompanies the ribonucleoprotein particle during nuclear export.

N Visa, E Izaurralde, J Ferreira, B Daneholt… - The Journal of cell …, 1996 - rupress.org
In vertebrates, a nuclear cap-binding complex (CBC) formed by two cap-binding proteins,
CBP20 and CBP80, is involved in several steps of RNA metabolism, including pre-mRNA …

[HTML][HTML] Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA: 5′ ss base pairing in yeast

SA Lacadie, M Rosbash - Molecular cell, 2005 - cell.com
To investigate the mechanism of spliceosome assembly in vivo, we performed chromatin
immunoprecipitation (ChIP) analysis of U1, U2, and U5 small nuclear ribonucleoprotein …

[HTML][HTML] Nuclear history of a pre‐mRNA determines the translational activity of cytoplasmic mRNA

K Matsumoto, KM Wassarman, AP Wolffe - The EMBO journal, 1998 - embopress.org
The pathways of synthesis and maturation of pre‐messenger RNA in the nucleus have a
direct effect on the translational efficiency of mRNA in the cytoplasm. The transcription of …