Stability, robustness, and containment: preparing synthetic biology for real-world deployment

S Kumar, J Hasty - Current Opinion in Biotechnology, 2023 - Elsevier
Highlights•Environmentally responsive survival circuitry enable synthetic cell containment.•
Increased genetic stability by engineering sequence and host context.•Control circuits for …

Accelerating Diverse Cell-Based Therapies Through Scalable Design

EL Peterman, D Ploessl… - Annual Review of …, 2024 - annualreviews.org
Augmenting cells with novel, genetically encoded functions will support therapies that
expand beyond natural capacity for immune surveillance and tissue regeneration. However …

Revealing the host-dependent nature of an engineered genetic inverter in concordance with physiology

DTC Chan, GS Baldwin, HC Bernstein - Biodesign Research, 2023 - spj.science.org
Broad-host-range synthetic biology is an emerging frontier that aims to expand our current
engineerable domain of microbial hosts for biodesign applications. As more novel species …

[HTML][HTML] miRNA circuit modules for precise, tunable control of gene expression

R Du, MJ Flynn, M Honsa, R Jungmann, MB Elowitz - BioRxiv, 2024 - ncbi.nlm.nih.gov
The ability to express transgenes at specified levels is critical for understanding cellular
behaviors, and for applications in gene and cell therapy. Transfection, viral vectors, and …

Bacteriophage self-counting in the presence of viral replication

T Yao, S Coleman, TVP Nguyen… - Proceedings of the …, 2021 - National Acad Sciences
When host cells are in low abundance, temperate bacteriophages opt for dormant
(lysogenic) infection. Phage lambda implements this strategy by increasing the frequency of …

CRISPR perfect adaptation for robust control of cellular immune and apoptotic responses

Y Zhang, S Zhang - Nucleic Acids Research, 2024 - academic.oup.com
A central challenge in the quest for precise gene regulation within mammalian cells is the
development of regulatory networks that can achieve perfect adaptation—where outputs …

Model-guided design of microRNA-based gene circuits supports precise dosage of transgenic cargoes into diverse primary cells

KS Love, CP Johnstone, EL Peterman, S Gaglione… - bioRxiv, 2024 - biorxiv.org
To realize the potential of engineered cells in therapeutic applications, transgenes must be
expressed within the window of therapeutic efficacy. Differences in copy number and other …

An account of models of molecular circuits for associative learning with reinforcement effect and forced dissociation

Z Li, A Fattah, P Timashev, A Zaikin - Sensors, 2022 - mdpi.com
The development of synthetic biology has enabled massive progress in biotechnology and
in approaching research questions from a brand-new perspective. In particular, the design …

Optogenetic application to investigating cell behavior and neurological disease

D Zhu, HJ Johnson, J Chen… - Frontiers in Cellular …, 2022 - frontiersin.org
Cells reside in a dynamic microenvironment that presents them with regulatory signals that
vary in time, space, and amplitude. The cell, in turn, interprets these signals and accordingly …

Facilitating Machine Learning‐Guided Protein Engineering with Smart Library Design and Massively Parallel Assays

HY Chu, ASL Wong - Advanced Genetics, 2021 - Wiley Online Library
Protein design plays an important role in recent medical advances from antibody therapy to
vaccine design. Typically, exhaustive mutational screens or directed evolution experiments …