Troubling trends in scientific software use
Software pervades every domain of science (–), perhaps nowhere more decisively than in
modeling. In key scientific areas of great societal importance, models and the software that …
modeling. In key scientific areas of great societal importance, models and the software that …
[PDF][PDF] Offspring from reproduction problems: What replication failure teaches us
Repeating experiments is an important instrument in the scientific toolbox to validate
previous work and build upon existing work. We present two concrete use cases involving …
previous work and build upon existing work. We present two concrete use cases involving …
Developing open-source scientific practice
KJ Millman, F Pérez - Implementing reproducible research, 2018 - taylorfrancis.com
Computational tools are at the core of modern research. In addition to experiment and
theory, the notions of simulation and data-intensive discovery are often referred to as “third …
theory, the notions of simulation and data-intensive discovery are often referred to as “third …
Current practice in software development for computational neuroscience and how to improve it
MO Gewaltig, R Cannon - PLoS computational biology, 2014 - journals.plos.org
Almost all research work in computational neuroscience involves software. As researchers
try to understand ever more complex systems, there is a continual need for software with …
try to understand ever more complex systems, there is a continual need for software with …
[PDF][PDF] BiographyNet: Managing Provenance at Multiple Levels and from Different Perspectives.
The BiographyNet project aims at inspiring historians when setting up new research
projects. The goal is to create a semantic knowledge base by extracting links between …
projects. The goal is to create a semantic knowledge base by extracting links between …
The role of container technology in reproducible computer systems research
Evaluating experimental results in the field of computer systems is a challenging task, mainly
due to the many changes in software and hardware that computational environments go …
due to the many changes in software and hardware that computational environments go …
Modeling, informatics, and the quest for reproducibility
WP Walters - Journal of chemical information and modeling, 2013 - ACS Publications
There is no doubt that papers published in the Journal of Chemical Information and
Modeling, and related journals, provide valuable scientific information. However, it is often …
Modeling, and related journals, provide valuable scientific information. However, it is often …
Publishing scientific software matters
C Pradal, G Varoquaux… - Journal of computational …, 2013 - inria.hal.science
Software is a central part of modern scientific discovery. Software turns a theoretical model
into quantitative predictions; software controls an experi-ment; and software extracts from …
into quantitative predictions; software controls an experi-ment; and software extracts from …
Cycling on the Freeway: The Perilous State of Open Source Neuroscience Software
Most scientists need software to perform their research (Barker et al., 2020; Carver et al.,
2022; Hettrick, 2014; Hettrick et al., 2014; Switters and Osimo, 2019), and neuroscientists …
2022; Hettrick, 2014; Hettrick et al., 2014; Switters and Osimo, 2019), and neuroscientists …
Open science and the role of publishers in reproducible research
I Hrynaszkiewicz, P Li, S Edmunds - Implementing Reproducible …, 2018 - taylorfrancis.com
When we read about the claims made in scientific papers, we tend to believe that they have
been written by their authors in good faith. The process of science therefore demands the …
been written by their authors in good faith. The process of science therefore demands the …