Gene retention, fractionation and subgenome differences in polyploid plants

F Cheng, J Wu, X Cai, J Liang, M Freeling, X Wang - Nature plants, 2018 - nature.com
All natural plant species are evolved from ancient polyploids. Polyloidization plays an
important role in plant genome evolution, species divergence and crop domestication. We …

Progress toward understanding heterosis in crop plants

PS Schnable, NM Springer - Annual review of plant biology, 2013 - annualreviews.org
Although heterosis, or hybrid vigor, is widely exploited in agriculture, a complete description
of its molecular underpinnings has remained elusive despite extensive investigation. It …

Integration of omic networks in a developmental atlas of maize

JW Walley, RC Sartor, Z Shen, RJ Schmitz, KJ Wu… - Science, 2016 - science.org
Coexpression networks and gene regulatory networks (GRNs) are emerging as important
tools for predicting functional roles of individual genes at a system-wide scale. To enable …

The genome of melon (Cucumis melo L.)

J Garcia-Mas, A Benjak… - Proceedings of the …, 2012 - National Acad Sciences
We report the genome sequence of melon, an important horticultural crop worldwide. We
assembled 375 Mb of the double-haploid line DHL92, representing 83.3% of the estimated …

Technological advances in maize breeding: past, present and future

C Andorf, WD Beavis, M Hufford, S Smith… - Theoretical and applied …, 2019 - Springer
Maize has for many decades been both one of the most important crops worldwide and one
of the primary genetic model organisms. More recently, maize breeding has been impacted …

Genetic control of root system development in maize

F Hochholdinger, P Yu, C Marcon - Trends in Plant Science, 2018 - cell.com
The maize root system comprises structurally and functionally different root types. Mutant
analyses have revealed that root-type-specific genetic regulators intrinsically determine the …

MaizeGDB update: new tools, data and interface for the maize model organism database

CM Andorf, EK Cannon, JL Portwood… - Nucleic acids …, 2016 - academic.oup.com
MaizeGDB is a highly curated, community-oriented database and informatics service to
researchers focused on the crop plant and model organism Zea mays ssp. mays. Although …

RNA sequencing reveals the complex regulatory network in the maize kernel

J Fu, Y Cheng, J Linghu, X Yang, L Kang… - Nature …, 2013 - nature.com
RNA sequencing can simultaneously identify exonic polymorphisms and quantitate gene
expression. Here we report RNA sequencing of developing maize kernels from 368 inbred …

Homoeolog expression bias and expression level dominance in allopolyploids

CE Grover, JP Gallagher, EP Szadkowski, MJ Yoo… - New Phytologist, 2012 - JSTOR
Polyploidy is now recognized as a characteristic feature of all angiosperm genomes (Jiao et
al., 2011), and remains an important speciation process today (Wendel, 2000; Comai, 2005; …

Association mapping across numerous traits reveals patterns of functional variation in maize

JG Wallace, PJ Bradbury, N Zhang, Y Gibon… - PLoS …, 2014 - journals.plos.org
Phenotypic variation in natural populations results from a combination of genetic effects,
environmental effects, and gene-by-environment interactions. Despite the vast amount of …