Applications of genotyping by sequencing in aquaculture breeding and genetics

D Robledo, C Palaiokostas, L Bargelloni… - Reviews in …, 2018 - Wiley Online Library
Selective breeding is increasingly recognized as a key component of sustainable production
of aquaculture species. The uptake of genomic technology in aquaculture breeding has …

Genetics and genomics of disease resistance in salmonid species

JM Yáñez, RD Houston, S Newman - Frontiers in genetics, 2014 - frontiersin.org
Infectious and parasitic diseases generate large economic losses in salmon farming. A
feasible and sustainable alternative to prevent disease outbreaks may be represented by …

Genomic prediction of host resistance to sea lice in farmed Atlantic salmon populations

HY Tsai, A Hamilton, AE Tinch, DR Guy… - Genetics Selection …, 2016 - Springer
Background Sea lice have significant negative economic and welfare impacts on marine
Atlantic salmon farming. Since host resistance to sea lice has a substantial genetic …

Factors influencing GH and IGF‐I gene expression on growth in teleost fish: how can aquaculture industry benefit?

KA Triantaphyllopoulos, D Cartas… - Reviews in …, 2020 - Wiley Online Library
Growth is a polygenic and environmentally controlled trait with the most influential genes
being those of growth hormone (GH) and insulin‐like growth factor‐I (IGF‐I), as they consist …

Research advances in the genomics and applications for molecular breeding of aquaculture animals

X You, X Shan, Q Shi - Aquaculture, 2020 - Elsevier
High-throughput sequencing technologies have been extensively applied to genetics and
breeding in the aquaculture industry. To date, many aquaculture animal genomes have …

Genomic Predictions and Genome-Wide Association Study of Resistance Against Piscirickettsia salmonis in Coho Salmon (Oncorhynchus kisutch) Using ddRAD …

A Barría, KA Christensen, GM Yoshida… - G3: Genes, genomes …, 2018 - academic.oup.com
Piscirickettsia salmonis is one of the main infectious diseases affecting coho salmon
(Oncorhynchus kisutch) farming, and current treatments have been ineffective for the control …

Sim RAD: an R package for simulation‐based prediction of the number of loci expected in RAD seq and similar genotyping by sequencing approaches

O Lepais, JT Weir - Molecular ecology resources, 2014 - Wiley Online Library
Application of high‐throughput sequencing platforms in the field of ecology and evolutionary
biology is developing quickly with the introduction of efficient methods to reduce genome …

The Genome and Linkage Map of the Northern Pike (Esox lucius): Conserved Synteny Revealed between the Salmonid Sister Group and the Neoteleostei

EB Rondeau, DR Minkley, JS Leong, AM Messmer… - Plos one, 2014 - journals.plos.org
The northern pike is the most frequently studied member of the Esociformes, the closest
order to the diverse and economically important Salmoniformes. The ancestor of all …

Genomic Prediction of Resistance to Pasteurellosis in Gilthead Sea Bream (Sparus aurata) Using 2b-RAD Sequencing

C Palaiokostas, S Ferraresso, R Franch… - G3: Genes …, 2016 - academic.oup.com
Gilthead sea bream (Sparus aurata) is a species of paramount importance to the
Mediterranean aquaculture industry, with an annual production exceeding 140,000 metric …

An ultra-high density linkage map and QTL mapping for sex and growth-related traits of common carp (Cyprinus carpio)

W Peng, J Xu, Y Zhang, J Feng, C Dong, L Jiang… - Scientific reports, 2016 - nature.com
High density genetic linkage maps are essential for QTL fine mapping, comparative
genomics and high quality genome sequence assembly. In this study, we constructed a high …