[HTML][HTML] Allele-specific expression and alternative splicing in horse× donkey and cattle× yak hybrids

Y Wang, S Gao, Y Zhao, WH Chen, JJ Shao… - Zoological …, 2019 - ncbi.nlm.nih.gov
Divergence of gene expression and alternative splicing is a crucial driving force in the
evolution of species; to date, however the molecular mechanism remains unclear. Hybrids of …

The contribution of cis- and trans-acting variants to gene regulation in wild and domesticated barley under cold stress and control conditions

M Haas, A Himmelbach… - Journal of experimental …, 2020 - academic.oup.com
Barley, like other crops, has experienced a series of genetic changes that have impacted its
architecture and growth habit to suit the needs of humans, termed the domestication …

[HTML][HTML] Fast effect size shrinkage software for beta-binomial models of allelic imbalance

JP Zitovsky, MI Love - F1000Research, 2019 - ncbi.nlm.nih.gov
Allelic imbalance occurs when the two alleles of a gene are differentially expressed within a
diploid organism and can indicate important differences in cis-regulation and epigenetic …

Spatially varying cis-regulatory divergence in Drosophila embryos elucidates cis-regulatory logic

PA Combs, HB Fraser - PLoS Genetics, 2018 - journals.plos.org
Spatial patterning of gene expression is a key process in development, yet how it evolves is
still poorly understood. Both cis-and trans-acting changes could participate in complex …

Cis-regulatory variation in relation to sex and sexual dimorphism in Drosophila melanogaster

P Mishra, TS Barrera, K Grieshop, AF Agrawal - bioRxiv, 2022 - biorxiv.org
Much of sexual dimorphism is likely due to sex-biased gene expression, which results from
differential regulation of a genome that is largely shared between males and females. Here …

aScan: a novel method for the study of allele specific expression in single individuals

F Zambelli, M Chiara, E Ferrandi, P Mandreoli… - Journal of Molecular …, 2021 - Elsevier
In diploid organisms, two copies of each allele are normally inherited from parents. Paternal
and maternal alleles can be regulated and expressed unequally, which is referred to as …

Power calculator for detecting allelic imbalance using hierarchical Bayesian model

K Sherbina, LG León-Novelo, SV Nuzhdin… - BMC Research …, 2021 - Springer
Objective Allelic imbalance (AI) is the differential expression of the two alleles in a diploid. AI
can vary between tissues, treatments, and environments. Methods for testing AI exist, but …

Testcrosses are an efficient strategy for identifying cis-regulatory variation: Bayesian analysis of allele-specific expression (BayesASE)

BR Miller, AM Morse, JE Borgert, Z Liu, K Sinclair… - G3, 2021 - academic.oup.com
Allelic imbalance (AI) occurs when alleles in a diploid individual are differentially expressed
and indicates cis acting regulatory variation. What is the distribution of allelic effects in a …

Sequencing-Based Gene Discovery and Gene Regulatory Variation Exploration in Pedigreed Populations

RE McEwan - 2022 - search.proquest.com
Forward genetics discovery of the molecular basis of induced mutants has fundamentally
contributed to our understanding of basic biological processes such as metabolism, cell …

Linear modeling reveals a predominance of cis- over trans- regulatory effects in wild and domesticated barley

M Haas, A Himmelbach, M Mascher - bioRxiv, 2019 - biorxiv.org
Barley, like other crops, has experienced a series of genetic changes that have impacted its
architecture and growth habit to suit the needs of humans, termed the domestication …