Tectonics, climate and the diversification of the tropical African terrestrial flora and fauna

TLP Couvreur, G Dauby, A Blach‐Overgaard… - Biological …, 2021 - Wiley Online Library
Tropical Africa is home to an astonishing biodiversity occurring in a variety of ecosystems.
Past climatic change and geological events have impacted the evolution and diversification …

Emerging concepts of data integration in pathogen phylodynamics

G Baele, MA Suchard, A Rambaut… - Systematic biology, 2017 - academic.oup.com
Phylodynamics has become an increasingly popular statistical framework to extract
evolutionary and epidemiological information from pathogen genomes. By harnessing such …

Annotated checklist, taxonomy and distribution of rodents in Ethiopia

J Bryja, Y Meheretu, R Šumbera, LA Lavrenchenko - Folia zoologica, 2019 - BioOne
We provide an annotated checklist of rodents of Ethiopia. For each species we show a
distributional map based on critically revised data from:(1) published literature;(2) museum …

Fossils know it best: using a new set of fossil calibrations to improve the temporal phylogenetic framework of murid rodents (Rodentia: Muridae)

T Aghová, Y Kimura, J Bryja, G Dobigny… - Molecular Phylogenetics …, 2018 - Elsevier
Abstract Murid rodents (Rodentia: Muridae) represent the most diverse and abundant
mammalian family. In this study, we provide a refined set of fossil calibrations which is used …

[HTML][HTML] Data integration in Bayesian phylogenetics

GW Hassler, AF Magee, Z Zhang… - Annual review of …, 2023 - annualreviews.org
Researchers studying the evolution of viral pathogens and other organisms increasingly
encounter and use large and complex data sets from multiple different sources. Statistical …

Evolutionary history of the thicket rats (genus Grammomys) mirrors the evolution of African forests since late Miocene

J Bryja, R Šumbera, JC Kerbis Peterhans… - Journal of …, 2017 - Wiley Online Library
Aim Grammomys are mostly arboreal rodents occurring in forests, woodlands and thickets
throughout sub‐Saharan Africa. We investigated whether the divergence events within the …

The phylogeny of the African wood mice (Muridae, Hylomyscus) based on complete mitochondrial genomes and five nuclear genes reveals their evolutionary history …

V Nicolas, PH Fabre, J Bryja, C Denys… - Molecular phylogenetics …, 2020 - Elsevier
Wood mice of the genus Hylomyscus, are small-sized rodents widely distributed in lowland
and montane rainforests in tropical Africa, where they can be locally abundant. Recent …

[HTML][HTML] Multiple radiations of spiny mice (Rodentia: Acomys) in dry open habitats of Afro-Arabia: evidence from a multi-locus phylogeny

T Aghová, K Palupčíková, R Šumbera, D Frynta… - BMC Evolutionary …, 2019 - Springer
Background Spiny mice of the genus Acomys are distributed mainly in dry open habitats in
Africa and the Middle East, and they are widely used as model taxa for various biological …

Nuclear phylogenomics, but not mitogenomics, resolves the most successful Late Miocene radiation of African mammals (Rodentia: Muridae: Arvicanthini)

O Mikula, V Nicolas, R Šumbera, A Konečný… - Molecular Phylogenetics …, 2021 - Elsevier
Abstract The tribe Arvicanthini (Muridae: Murinae) is a highly diversified group of rodents
(ca. 100 species) and with 18 African genera (plus one Asiatic) represents probably the most …

Molecular systematics and biogeographic history of the African climbing-mouse complex (Dendromus)

G Voelker, JW Huntley, J Bryja, C Denys… - Molecular Phylogenetics …, 2021 - Elsevier
Climbing mice in the genus Dendromus (sensu lato) are widely distributed in Africa, south of
the Saharan Desert. The 17 currently recognized species in the genus range from …